Gene: AT5G38110
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G38110
- Transcript Identifier AT5G38110.1
- Gene Type Coding gene
- Location Chr5 : 15208643-15210064 : positive
Gene Family Information
- ID HOM05D003239
- #Genes/#Species 212/98
- Phylogenetic origin
- ID ORTHO05D003682
- #Genes/#Species 210/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G38110.1
- symbol ASF1B
- Alias SGA01,SGA1
- uniprot Q9LS09
Descriptions
- Description anti- silencing function 1b
- Computational description anti- silencing function 1b (ASF1B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA mediated transformation, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone, ASF1-like (InterPro:IPR006818); BEST Arabidopsis thaliana protein match is: ASF1 like histone chaperone (TAIR:AT1G66740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051301 | IMP | Gene Ontology | cell division | 1 |
| GO:0006333 | IEA | GOA Database | chromatin assembly or disassembly | |
| GO:0006333 | IEA | InterPro | chromatin assembly or disassembly | |
| GO:0006325 | IEA | GOA Database | chromatin organization | |
| GO:0006336 | IBA | Gene Ontology | DNA replication-independent nucleosome assembly | 2 |
| GO:0006335 | IBA | Gene Ontology | DNA replication-dependent nucleosome assembly | 2 |
| GO:0031567 | IMP | Gene Ontology | mitotic cell size control checkpoint signaling | 1 |
| GO:0010091 | IMP | Gene Ontology | trichome branching | 1 |
| GO:0008361 | IMP | Gene Ontology | regulation of cell size | 1 |
| GO:0000724 | IMP | Gene Ontology | double-strand break repair via homologous recombination | 1 |
| GO:0009294 | IMP | Gene Ontology | DNA mediated transformation | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042393 | IBA | Gene Ontology | histone binding | 2 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 1 |
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0005737 | IDA | Gene Ontology | cytoplasm | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.2.4 | Chromatin organisation.histone chaperone activities.histone chaperone (ASF1) |