Gene: AT5G37055
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G37055
- Transcript Identifier AT5G37055.1
- Gene Type Coding gene
- Location Chr5 : 14641634-14642387 : negative
Gene Family Information
- ID HOM05D005631
- #Genes/#Species 137/90
- Phylogenetic origin
- ID ORTHO05D006765
- #Genes/#Species 138/91
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G37055.1
- symbol SEF
- Alias ATSWC6
- full_name SERRATED LEAVES AND EARLY FLOWERING
- uniprot Q9FHW2
Descriptions
- Description HIT-type Zinc finger family protein
- Computational description SERRATED LEAVES AND EARLY FLOWERING (SEF); CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043486 | IEA | GOA Database | histone exchange | |
| GO:0043486 | IBA | Gene Ontology | histone exchange | 1 |
| GO:0043486 | IEA | InterPro | histone exchange | |
| GO:0006338 | IEA | GOA Database | chromatin remodeling | |
| GO:0006338 | IEA | InterPro | chromatin remodeling | |
| GO:0030154 | IEA | GOA Database | cell differentiation | |
| GO:0009908 | IEA | GOA Database | flower development | |
| GO:0042742 | IGI | Gene Ontology | defense response to bacterium | 2 |
| GO:0048638 | IMP | Gene Ontology | regulation of developmental growth | 3 |
| GO:0009909 | IMP | Gene Ontology | regulation of flower development | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031491 | IBA | Gene Ontology | nucleosome binding | 1 |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0042802 | IPI | Gene Ontology | identical protein binding | 3 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 3 |
| GO:0016607 | IEA | GOA Database | nuclear speck | |
| GO:0000812 | IBA | Gene Ontology | Swr1 complex | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.4.4.3 | Chromatin organisation.nucleosome remodeling.SWR1 chromatin remodeling complex.component SWC6 |