Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G37055 Arabidopsis thaliana HOM05D005631 ORTHO05D006765 3.0e-88 328.6 172 100.0
AL7G45820 Arabidopsis lyrata HOM05D005631 ORTHO05D006765 6.2e-86 320.9 172 95.9
BraA10t43643Z Brassica rapa HOM05D005631 ORTHO05D006765 7.5e-84 313.9 172 93.6
A03p12230 Brassica napus HOM05D005631 ORTHO05D006765 9.8e-84 313.5 172 93.6
C03p14340 Brassica napus HOM05D005631 ORTHO05D006765 9.8e-84 313.5 172 93.6
BraA03t10534Z Brassica rapa HOM05D005631 ORTHO05D006765 9.8e-84 313.5 172 93.6
Carub.0007s3232 Capsella rubella HOM05D005631 ORTHO05D006765 1.3e-83 313.2 174 94.3
A10p15820 Brassica napus HOM05D005631 ORTHO05D006765 2.2e-83 312.4 172 93.0
C09p50330 Brassica napus HOM05D005631 ORTHO05D006765 6.4e-83 310.8 172 93.0
BcaC04g19866 Brassica carinata HOM05D005631 ORTHO05D006765 1.9e-82 309.3 172 91.9
BolC9t57889H Brassica oleracea HOM05D005631 ORTHO05D006765 1.9e-82 309.3 172 91.9
BcaB08g36180 Brassica carinata HOM05D005631 ORTHO05D006765 6.0e-81 304.3 172 90.7
CARHR272280 Cardamine hirsuta HOM05D005631 ORTHO05D006765 6.0e-81 304.3 173 91.9
Thhalv10014837m.g Eutrema salsugineum HOM05D005631 ORTHO05D006765 6.0e-81 304.3 172 92.4
BolC3t13878H Brassica oleracea HOM05D005631 ORTHO05D006765 1.0e-80 303.5 173 91.9
Aa31LG11G240 Aethionema arabicum HOM05D000127 ORTHO05D007184 2.0e-76 289.3 173 86.1
THA.LOC104810692 Tarenaya hassleriana HOM05D005631 ORTHO05D006765 2.5e-71 272.3 172 82.0
Cpa.g.sc2.358 Carica papaya HOM05D005631 ORTHO05D006765 4.1e-66 255.0 175 77.1
FAN11G1428 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.9e-63 246.1 174 75.3
FAN16G0042 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.9e-63 246.1 174 75.3
FvH4_3g39740 Fragaria vesca HOM05D005631 ORTHO05D006765 5.6e-63 244.6 174 74.7
FAN21G1424 Fragaria x ananassa HOM05D005631 ORTHO05D006765 5.6e-63 244.6 174 75.3
RcHm_v2.0_Chr5g0071621 Rosa chinensis HOM05D005631 ORTHO05D006765 7.3e-63 244.2 174 74.7
Ca_15010_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 1.8e-61 239.6 175 74.3
ClCG02G019260 Citrullus lanatus HOM05D005631 ORTHO05D006765 3.1e-61 238.8 174 72.4
Prupe.6G048500 Prunus persica HOM05D005631 ORTHO05D006765 3.1e-61 238.8 174 71.8
Thecc.09G357600 Theobroma cacao HOM05D005631 ORTHO05D006765 6.9e-61 237.7 175 75.4
QL01p026260 Quercus lobata HOM05D005631 ORTHO05D006765 1.2e-60 236.9 174 73.6
Atru.chr3.4122 Acer truncatum HOM05D005631 ORTHO05D006765 2.0e-60 236.1 174 74.7
Gohir.A03G025600 Gossypium hirsutum HOM05D005631 ORTHO05D006765 2.6e-60 235.7 175 74.3
Gohir.D03G142900 Gossypium hirsutum HOM05D005631 ORTHO05D006765 2.6e-60 235.7 175 74.3
Gorai.003G150100 Gossypium raimondii HOM05D005631 ORTHO05D006765 2.6e-60 235.7 175 74.3
Medtr3g465690 Medicago truncatula HOM05D005631 ORTHO05D006765 2.6e-60 235.7 175 72.6
FAN25G2299 Fragaria x ananassa HOM05D005631 ORTHO05D006765 3.4e-60 235.3 174 72.4
Cfa011776 Carpinus fangiana HOM05D005631 ORTHO05D006765 4.4e-60 235.0 175 70.9
Glyma.18G057300 Glycine max HOM05D005631 ORTHO05D006765 5.8e-60 234.6 175 72.6
arahy.Tifrunner.gnm1.ann1.7E53FC Arachis hypogaea HOM05D005631 ORTHO05D006765 7.6e-60 234.2 184 69.6
Lalb_Chr15g0083281 Lupinus albus HOM05D005631 ORTHO05D006765 7.6e-60 234.2 175 72.0
GSVIVG01033331001 Vitis vinifera HOM05D005631 ORTHO05D006765 1.7e-59 233.0 172 72.1
CsaV3_6G015890 Cucumis sativus L. HOM05D005631 ORTHO05D006765 2.2e-59 232.6 174 71.8
MD03G1056300 Malus domestica HOM05D005631 ORTHO05D006765 2.2e-59 232.6 174 71.3
Sed0015217 Sechium edule HOM05D005631 ORTHO05D006765 2.9e-59 232.3 174 70.1
arahy.Tifrunner.gnm1.ann1.I7JS5F Arachis hypogaea HOM05D005631 ORTHO05D006765 3.8e-59 231.9 176 71.6
Glyma.11G164100 Glycine max HOM05D005631 ORTHO05D006765 6.4e-59 231.1 175 72.0
Lj6g0005877 Lotus japonicus HOM05D005631 ORTHO05D006765 6.4e-59 231.1 171 71.9
SGA_v2.0_scaffold18G08260 Striga asiatica HOM05D005631 ORTHO05D006765 8.4e-59 230.7 175 72.6
MELO3C025697.2 Cucumis melo HOM05D005631 ORTHO05D006765 1.1e-58 230.3 174 71.3
Manes.02G211700 Manihot esculenta HOM05D005631 ORTHO05D006765 1.4e-58 229.9 175 72.6
Potri.013G152600 Populus trichocarpa HOM05D005631 ORTHO05D006765 1.4e-58 229.9 175 72.6
Ciclev10029319m.g Citrus clementina HOM05D005631 ORTHO05D006765 3.2e-58 228.8 174 72.4
Sabra13G0122700 Salix brachista HOM05D005631 ORTHO05D006765 3.2e-58 228.8 175 72.6
CANSAT54G1076 Cannabis sativa HOM05D005631 ORTHO05D006765 4.2e-58 228.4 174 70.7
CSS0000896 Camellia sinensis var. sinensis HOM05D005631 ORTHO05D006765 5.4e-58 228.0 175 70.9
vmacro14621 Vaccinium macrocarpon HOM05D005631 ORTHO05D006765 7.1e-58 227.6 166 74.1
Lsat_1_v5_gn_6_47101 Lactuca sativa HOM05D005631 ORTHO05D006765 1.6e-57 226.5 175 70.9
SGA_v2.0_scaffold20G09058 Striga asiatica HOM05D005631 ORTHO05D006765 1.6e-57 226.5 179 71.5
Nitab4.5_0003548g0030 Nicotiana tabacum HOM05D005631 ORTHO05D006765 2.7e-57 225.7 174 70.7
PSO349G0142 Papaver somniferum HOM05D005631 ORTHO05D006765 2.7e-57 225.7 176 69.9
Hund18954 Selenicereus undatus HOM05D000127 ORTHO05D006765 2.7e-57 225.7 175 69.1
MSTRG.2645 Avicennia marina HOM05D005631 ORTHO05D006765 6.0e-57 224.6 175 70.9
Oeu059694.1 Olea europaea HOM05D005631 ORTHO05D006765 6.0e-57 224.6 175 70.9
HanXRQChr10g0284941 Helianthus annuus HOM05D005631 ORTHO05D006765 7.8e-57 224.2 171 70.2
MD11G1057500 Malus domestica HOM05D005631 ORTHO05D006765 7.8e-57 224.2 174 70.1
HPP92_019076 Vanilla planifolia HOM05D005631 ORTHO05D006765 1.0e-56 223.8 175 71.4
Actinidia23857 Actinidia chinensis HOM05D005631 ORTHO05D006765 1.3e-56 223.4 175 68.0
DCAR_004046 Daucus carota HOM05D005631 ORTHO05D006765 2.3e-56 222.6 175 69.1
Rhsim01G0240900 Rhododendron simsii HOM05D005631 ORTHO05D006765 2.3e-56 222.6 166 71.1
Migut.H00695 Erythranthe guttata HOM05D005631 ORTHO05D006765 3.0e-56 222.2 175 69.7
Nn1g05206 Nelumbo nucifera HOM05D005631 ORTHO05D006765 3.0e-56 222.2 175 70.9
PGR102G0278 Punica granatum HOM05D005631 ORTHO05D006765 3.0e-56 222.2 175 72.0
ATR0304G021 Amborella trichopoda HOM05D005631 ORTHO05D006765 1.1e-55 220.3 175 68.6
CAN.G354.39 Capsicum annuum HOM05D005631 ORTHO05D006765 1.1e-55 220.3 176 69.9
PGSC0003DMG400022531 Solanum tuberosum HOM05D005631 ORTHO05D006765 1.5e-55 219.9 174 69.0
Hma1.2p1_1586F.1_g292190 Hydrangea macrophylla HOM05D005631 ORTHO05D006765 1.9e-55 219.5 175 69.1
SalBow1G1570 Salvia bowleyana HOM05D005631 ORTHO05D006765 1.9e-55 219.5 175 69.7
Eucgr.B04002 Eucalyptus grandis HOM05D005631 ORTHO05D006765 4.3e-55 218.4 175 69.1
Solyc03g033480.4 Solanum lycopersicum HOM05D005631 ORTHO05D006765 4.3e-55 218.4 174 68.4
Sopen03g006230 Solanum pennellii HOM05D005631 ORTHO05D006765 1.3e-54 216.9 174 67.8
VMungo1383G2760 Vigna mungo HOM05D005631 ORTHO05D006765 1.6e-54 216.5 153 73.9
TAR633G1157 Trochodendron aralioides HOM05D005631 ORTHO05D006765 2.1e-54 216.1 175 68.0
Nitab4.5_0000438g0150 Nicotiana tabacum HOM05D005631 ORTHO05D006765 2.8e-54 215.7 174 69.0
BcaB01g04521 Brassica carinata HOM05D005631 ORTHO05D006765 2.4e-53 212.6 152 77.0
Zm00001eb195120 Zea mays HOM05D005631 ORTHO05D006765 6.4e-51 204.5 165 67.3
Os03g0367800 Oryza sativa ssp. japonica HOM05D005631 ORTHO05D006765 1.1e-50 203.8 165 66.1
unitig_899.g14680 Utricularia gibba HOM05D005631 ORTHO05D006765 7.1e-50 201.1 175 65.7
ECA248G0403 Erigeron canadensis HOM05D005631 ORTHO05D006765 2.1e-49 199.5 175 64.6
Cc07_g10850 Coffea canephora HOM05D005631 ORTHO05D006765 4.6e-49 198.4 176 64.8
Aqoxy1G01288 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 1.3e-48 196.8 168 64.3
Ca_15008_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 1.3e-48 196.8 151 73.5
COL.COLO4_11152 Corchorus olitorius HOM05D005631 ORTHO05D006765 6.7e-48 194.5 140 74.3
Mapoly0066s0110 Marchantia polymorpha HOM05D005631 ORTHO05D006765 6.7e-48 194.5 179 58.7
SEGI_31870 Sequoiadendron giganteum HOM05D005631 ORTHO05D006765 6.7e-48 194.5 141 70.2
Pp3c4_18980 Physcomitrium patens HOM05D005631 ORTHO05D006765 1.6e-46 189.9 169 62.7
Phvul.006G073900 Phaseolus vulgaris HOM05D005631 ORTHO05D006765 6.2e-46 188.0 146 71.2
TPR.G25706 Trifolium pratense HOM05D005631 ORTHO05D006765 7.1e-42 174.5 138 73.2
EL10Ac7g15917 Beta vulgaris HOM05D005631 ORTHO05D006765 1.8e-40 169.9 174 56.9
Psat5g026160 Pisum sativum HOM05D005631 ORTHO05D006765 1.3e-38 163.7 141 66.0
SMO134G0149 Selaginella moellendorffii HOM05D005631 ORTHO05D006765 1.6e-38 163.3 178 53.9
Sp6g20150 Schrenkiella parvula HOM05D000127 ORTHO05D007184 3.7e-38 162.2 103 85.4
Sabra06G0125700 Salix brachista HOM05D005631 ORTHO05D006765 1.4e-37 160.2 155 63.2
AUR62009671 Chenopodium quinoa HOM05D005631 ORTHO05D006765 2.6e-36 156.0 138 65.2
Peaxi162Scf00635g00621 Petunia axillaris HOM05D005631 ORTHO05D006765 2.6e-36 156.0 143 60.1
AUR62001872 Chenopodium quinoa HOM05D005631 ORTHO05D006765 4.5e-36 155.2 138 65.2
VMungo0540G1856 Vigna mungo HOM05D005631 ORTHO05D006765 5.8e-36 154.8 117 70.1
Atru.chr3.4121 Acer truncatum HOM05D005631 ORTHO05D006765 2.2e-35 152.9 173 59.0
Oeu059678.1 Olea europaea HOM05D005631 ORTHO05D006765 4.9e-35 151.8 153 60.1
Duzib150G1412 Durio zibethinus HOM05D005631 ORTHO05D006765 1.1e-26 124.0 115 69.6
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 1.4e-26 123.6 110 63.6
AagrBONN_evm.TU.Sc2ySwM_117.69 Anthoceros agrestis HOM05D005631 ORTHO05D006765 5.1e-24 115.2 172 40.7
CiPaw.13G069500 Carya illinoinensis HOM05D005631 ORTHO05D006765 9.7e-23 110.9 107 61.7
MCO05G013 Micromonas commoda HOM05D005631 ORTHO05D006765 9.7e-23 110.9 166 44.6
Actinidia34479 Actinidia chinensis HOM05D005631 ORTHO05D006765 1.3e-22 110.5 110 64.5
BcaC05g26847 Brassica carinata HOM05D005631 ORTHO05D006765 3.7e-22 109.0 80 78.8
BcaC09g51457 Brassica carinata HOM05D005631 ORTHO05D006765 3.7e-22 109.0 65 90.8
A08p25520 Brassica napus HOM05D005631 ORTHO05D006765 4.1e-21 105.5 65 87.7
BolC1t05347H Brassica oleracea HOM05D005631 ORTHO05D006765 4.1e-21 105.5 65 87.7
BcaC08g44597 Brassica carinata HOM05D005631 ORTHO05D006765 1.2e-20 104.0 66 87.9
BcaC09g51408 Brassica carinata HOM05D005631 ORTHO05D006765 1.5e-20 103.6 65 87.7
A07p13430 Brassica napus HOM05D005631 ORTHO05D006765 2.9e-19 99.4 65 86.2
Sc21g0005270 Simmondsia chinensis HOM05D005631 ORTHO05D006765 3.6e-17 92.4 107 57.9
Oeu008095.1 Olea europaea HOM05D005631 ORTHO05D006765 9.7e-15 84.3 68 72.1
Sabra19G0122200 Salix brachista HOM05D005631 ORTHO05D006765 1.7e-14 83.6 94 59.6
Sabra16G0029400 Salix brachista HOM05D005631 ORTHO05D006765 4.1e-13 79.0 94 57.4
BcaC02g08205 Brassica carinata HOM05D005631 ORTHO05D006765 5.3e-13 78.6 49 83.7
C01p12950 Brassica napus HOM05D005631 ORTHO05D006765 5.3e-13 78.6 47 91.5
MBI18_g07568_MAGBIO Magnolia biondii HOM05D005631 ORTHO05D006765 6.9e-13 78.2 69 63.8
C01p13430 Brassica napus HOM05D005631 ORTHO05D006765 2.0e-12 76.6 47 89.4
C04p57300 Brassica napus HOM05D005631 ORTHO05D006765 7.7e-12 74.7 47 85.1
Cre01.g044000 Chlamydomonas reinhardtii HOM05D005631 ORTHO05D006765 8.5e-11 71.2 140 39.3
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 1.4e-10 70.5 93 55.9
Oeu008088.1 Olea europaea HOM05D005631 ORTHO05D006765 4.2e-10 68.9 83 45.8
CDE02G1786 Ceratophyllum demersum HOM05D005631 ORTHO05D006765 9.4e-10 67.8 120 44.2
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 8.0e-09 64.7 68 64.7
CBR_g4734 Chara braunii HOM05D005631 ORTHO05D006765 3.3e-07 59.3 106 43.4
Sabra19G0131600 Salix brachista HOM05D005631 ORTHO05D006765 2.2e-06 56.6 97 47.4
Cc05_g02510 Coffea canephora HOM05D005631 ORTHO05D006765 3.7e-06 55.8 109 45.9
BcaC02g09329 Brassica carinata HOM05D005631 ORTHO05D006765 4.8e-06 55.5 64 56.2
Aqoxy1G01289 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 6.3e-06 55.1 50 68.0


User provided reference genes

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