Gene: AT5G27120
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G27120
- Transcript Identifier AT5G27120.1
- Gene Type Coding gene
- Location Chr5 : 9541287-9543684 : positive
Gene Family Information
- ID HOM05D001386
- #Genes/#Species 453/100
- Phylogenetic origin
- ID ORTHO05D003791
- #Genes/#Species 205/95
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G27120.1
- uniprot O04658
Descriptions
- Description NOP56-like pre RNA processing ribonucleoprotein
- Computational description NOP56-like pre RNA processing ribonucleoprotein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: NOP56-like pre RNA processing ribonucleoprotein (TAIR:AT3G05060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042254 | IEA | GOA Database | ribosome biogenesis |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030515 | IEA | GOA Database | snoRNA binding | |
| GO:0030515 | IBA | Gene Ontology | snoRNA binding | 1 |
| GO:0030515 | IEA | InterPro | snoRNA binding | |
| GO:0003729 | IDA | Gene Ontology | mRNA binding | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005730 | IDA IEA | GOA Database | nucleolus | |
| GO:0005730 | HDA | Gene Ontology | nucleolus | 3 |
| GO:0032040 | IEA | GOA Database | small-subunit processome | |
| GO:0032040 | IBA | Gene Ontology | small-subunit processome | 1 |
| GO:0032040 | IEA | InterPro | small-subunit processome | |
| GO:0031428 | IEA | GOA Database | box C/D RNP complex | |
| GO:0031428 | IBA | Gene Ontology | box C/D RNP complex | 1 |
| GO:0031428 | IEA | InterPro | box C/D RNP complex | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0009506 | IDA | GOA Database | plasmodesma | |
| GO:0009506 | HDA | Gene Ontology | plasmodesma | 4 |
| GO:0005829 | RCA | Gene Ontology | cytosol | 5 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 17.1.1.2.1.5.3 | Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.snoRNP scaffold component Nop58 |