Gene: AT5G23250
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G23250
- Transcript Identifier AT5G23250.2
- Gene Type Coding gene
- Location Chr5 : 7830460-7832265 : positive
Gene Family Information
- ID HOM05D001982
- #Genes/#Species 333/100
- Phylogenetic origin
- ID ORTHO05D003938
- #Genes/#Species 198/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G23250.2
- uniprot Q8LAD2
Descriptions
- Description Succinyl-CoA ligase, alpha subunit
- Computational description Succinyl-CoA ligase, alpha subunit; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, copper ion binding; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding domain (InterPro:IPR016040), CoA-binding (InterPro:IPR003781), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: Succinyl-CoA ligase, alpha subunit (TAIR:AT5G08300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Computational description Succinyl-CoA ligase, alpha subunit; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, copper ion binding; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding domain (InterPro:IPR016040), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), CoA-binding (InterPro:IPR003781), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: Succinyl-CoA ligase, alpha subunit (TAIR:AT5G08300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006099 | IBA IEA | Gene Ontology | tricarboxylic acid cycle | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003824 | IEA | GOA Database | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0016874 | IEA | GOA Database | ligase activity | |
| GO:0005507 | IDA | GOA Database | copper ion binding | |
| GO:0005507 | HDA | Gene Ontology | copper ion binding | 2 |
| GO:0004776 | IBA | Gene Ontology | succinate-CoA ligase (GDP-forming) activity | 1 |
| GO:0004775 | IBA IEA | Gene Ontology | succinate-CoA ligase (ADP-forming) activity | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005739 | IDA IEA | GOA Database | mitochondrion | |
| GO:0005739 | HDA ISM, IBA | Gene Ontology | mitochondrion | 1 3 |
| GO:0009361 | IBA | Gene Ontology | succinate-CoA ligase complex (ADP-forming) | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 2.3.5.1 | Cellular respiration.tricarboxylic acid cycle.succinyl-CoA ligase heterodimer.subunit alpha |