Gene: AT5G20950
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G20950
- Transcript Identifier AT5G20950.1
- Gene Type Coding gene
- Location Chr5 : 7107609-7110775 : negative
Gene Family Information
- ID HOM05D000495
- #Genes/#Species 1074/96
- Phylogenetic origin
- ID ORTHO05D000357
- #Genes/#Species 1061/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT5G20950.1
- uniprot Q8W112
Descriptions
- Description Glycosyl hydrolase family protein
- Computational description Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G20940.1); Has 10079 Blast hits to 9261 proteins in 1444 species: Archae - 71; Bacteria - 6091; Metazoa - 14; Fungi - 1552; Plants - 486; Viruses - 0; Other Eukaryotes - 1865 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0009251 | IBA | Gene Ontology | glucan catabolic process | 1 |
GO:0005975 | IEA | GOA Database | carbohydrate metabolic process | |
GO:0005975 | IEA | InterPro | carbohydrate metabolic process | |
GO:0008152 | IEA | GOA Database | metabolic process | |
GO:0009969 | IMP | Gene Ontology | xyloglucan biosynthetic process | 2 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0004553 | IEA | GOA Database | hydrolase activity, hydrolyzing O-glycosyl compounds | |
GO:0004553 | IEA | InterPro | hydrolase activity, hydrolyzing O-glycosyl compounds | |
GO:0016787 | IEA | GOA Database | hydrolase activity | |
GO:0016798 | IEA | GOA Database | hydrolase activity, acting on glycosyl bonds | |
GO:0008422 | IDA IBA | Gene Ontology | beta-glucosidase activity | 1 2 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005576 | IEA | GOA Database | extracellular region | |
GO:0005576 | ISM | Gene Ontology | extracellular region | |
GO:0009506 | IDA | GOA Database | plasmodesma | |
GO:0009506 | HDA | Gene Ontology | plasmodesma | 3 |
GO:0009505 | IDA | GOA Database | plant-type cell wall | |
GO:0009505 | HDA | Gene Ontology | plant-type cell wall | 4 |
GO:0005618 | IDA | GOA Database | cell wall | |
GO:0005618 | HDA | Gene Ontology | cell wall | 5 |
GO:0009536 | HDA | Gene Ontology | plastid | 6 |
GO:0048046 | IDA | Gene Ontology | apoplast | 2 |
GO:0005829 | RCA | Gene Ontology | cytosol | 7 |
GO:0005739 | ISM | Gene Ontology | mitochondrion |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR036962 | Glycoside hydrolase, family 3, N-terminal domain superfamily |
IPR036881 | Glycoside hydrolase family 3 C-terminal domain superfamily |
IPR001764 | Glycoside hydrolase, family 3, N-terminal |
IPR002772 | Glycoside hydrolase family 3 C-terminal domain |
IPR017853 | Glycoside hydrolase superfamily |
Mapman id | Description |
---|---|
50.3.2 | Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase |