Gene: AT5G10540

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G10540
  • Transcript Identifier AT5G10540.1
  • Gene Type Coding gene
  • Location Chr5 : 3328119-3332462 : positive

Gene Family Information

  • ID HOM05D001304
  • #Genes/#Species 481/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G10540.1
  • Alias TOP2,thimet metalloendopeptidase 2
  • uniprot Q949P2

Descriptions

  • Description Zincin-like metalloproteases family protein
  • Computational description Zincin-like metalloproteases family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: response to cadmium ion, proteolysis; LOCATED IN: cytosol, apoplast, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M3A/M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: Zincin-like metalloproteases family protein (TAIR:AT5G65620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006508
IEA
GOA Databaseproteolysis
GO:0006508
IBA
Gene Ontologyproteolysis1
GO:0006508
IEA
InterProproteolysis
GO:0046686
IEP
GOA Databaseresponse to cadmium ion
GO:0006518
IBA
Gene Ontologypeptide metabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008237
IEA
GOA Databasemetallopeptidase activity
GO:0008237
IEA
InterPrometallopeptidase activity
GO:0008233
IEA
GOA Databasepeptidase activity
GO:0008233
IEA
InterPropeptidase activity
GO:0004222
IEA
GOA Databasemetalloendopeptidase activity
GO:0004222
IBA
Gene Ontologymetalloendopeptidase activity1
GO:0004222
IEA
InterPrometalloendopeptidase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
IEA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol2
GO:0005737
IEA
GOA Databasecytoplasm
GO:0009507
ISM, IBA
Gene Ontologychloroplast1
GO:0048046
IDA
GOA Databaseapoplast
GO:0048046
HDA
Gene Ontologyapoplast3
GO:0005886
HDA
Gene Ontologyplasma membrane4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001567 Peptidase M3A/M3B catalytic domain
IPR034005 Peptidyl-dipeptidase DCP
IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal
IPR045090 Peptidase M3A/M3B
IPR024077 Neurolysin/Thimet oligopeptidase, domain 2
IPR024079 Metallopeptidase, catalytic domain superfamily
Mapman id Description
19.4.5.1 Protein homeostasis.proteolysis.metallopeptidase activities.M3-class metalloprotease