Gene: AT4G38030

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G38030
  • Transcript Identifier AT4G38030.1
  • Gene Type Coding gene
  • Location Chr4 : 17863206-17866730 : negative

Gene Family Information

  • ID HOM05D000583
  • #Genes/#Species 954/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G38030.1
  • uniprot F4JSW8

Descriptions

  • Description Rhamnogalacturonate lyase family protein
  • Computational description Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT2G22620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
Gene Ontologycarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016829
IEA
GOA Databaselyase activity
GO:0016829
ISS
Gene Ontologylyase activity
GO:0030246
IEA
Gene Ontologycarbohydrate binding
GO:0030246
IEA
InterProcarbohydrate binding
GO:0102210
IEA
Gene Ontologyrhamnogalacturonan endolyase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
IEA
GOA Databaseextracellular region
GO:0005576
ISM
Gene Ontologyextracellular region

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010325 Rhamnogalacturonate lyase
IPR029411 Rhamnogalacturonan lyase, domain III
IPR008979 Galactose-binding-like domain superfamily
IPR011013 Galactose mutarotase-like domain superfamily
IPR013784 Carbohydrate-binding-like fold
IPR014718 Glycoside hydrolase-type carbohydrate-binding
IPR029413 Rhamnogalacturonan lyase, domain II
Mapman id Description
35.1 not assigned.annotated