Gene: AT4G34200

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G34200
  • Transcript Identifier AT4G34200.1
  • Gene Type Coding gene
  • Location Chr4 : 16374041-16376561 : negative

Gene Family Information

  • ID HOM05D001181
  • #Genes/#Species 527/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G34200.1
  • symbol EDA9
  • Alias PGDH1,phosphoglycerate dehydrogenase 1
  • full_name embryo sac development arrest 9
  • uniprot O49485

Descriptions

  • Description D-3-phosphoglycerate dehydrogenase
  • Computational description embryo sac development arrest 9 (EDA9); FUNCTIONS IN: ATP binding; INVOLVED IN: megagametogenesis; LOCATED IN: mitochondrion, chloroplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236), D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508), Amino acid-binding ACT (InterPro:IPR002912), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT3G19480.1); Has 30608 Blast hits to 30602 proteins in 2772 species: Archae - 489; Bacteria - 18520; Metazoa - 741; Fungi - 1175; Plants - 586; Viruses - 5; Other Eukaryotes - 9092 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006564
IEA
Gene OntologyL-serine biosynthetic process
GO:0006564
IEA
InterProL-serine biosynthetic process
GO:0000096
IMP
Gene Ontologysulfur amino acid metabolic process1
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy2
GO:0009555
IMP
Gene Ontologypollen development2
GO:0009561
IMP
Gene Ontologymegagametogenesis3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004617
IEA
GOA Databasephosphoglycerate dehydrogenase activity
GO:0004617
IMP
IBA
Gene Ontologyphosphoglycerate dehydrogenase activity1 4
GO:0004617
IEA
InterProphosphoglycerate dehydrogenase activity
GO:0051287
IEA
Gene OntologyNAD binding
GO:0051287
IEA
InterProNAD binding
GO:0016616
IEA
GOA Databaseoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016616
IEA
InterProoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0005524
IDA
GOA DatabaseATP binding
GO:0005524
HDA
Gene OntologyATP binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
IDA, HDA
Gene Ontologyplastid1 6
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast7
GO:0005739
IDA
GOA Databasemitochondrion
GO:0005739
HDA
Gene Ontologymitochondrion8
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
IBA
Gene Ontologychloroplast stroma4 9
GO:0005886
HDA
Gene Ontologyplasma membrane10
GO:0005829
RCA
Gene Ontologycytosol11

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002912 ACT domain
IPR029009 Allosteric substrate binding domain superfamily
IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
IPR036291 NAD(P)-binding domain superfamily
IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain
IPR006236 D-3-phosphoglycerate dehydrogenase
Mapman id Description
4.1.4.1.1 Amino acid metabolism.biosynthesis.serine family.non-photorespiratory serine.phosphoglycerate dehydrogenase