Gene: AT4G25740

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G25740
  • Transcript Identifier AT4G25740.1
  • Gene Type Coding gene
  • Location Chr4 : 13107488-13108751 : negative

Gene Family Information

  • ID HOM05D001943
  • #Genes/#Species 340/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G25740.1
  • uniprot Q9SW09

Descriptions

  • Description RNA binding Plectin/S10 domain-containing protein
  • Computational description RNA binding Plectin/S10 domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: RNA binding Plectin/S10 domain-containing protein (TAIR:AT5G52650.1); Has 2455 Blast hits to 1939 proteins in 382 species: Archae - 0; Bacteria - 320; Metazoa - 798; Fungi - 208; Plants - 219; Viruses - 1; Other Eukaryotes - 909 (source: NCBI BLink).
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
Gene OntologymRNA binding1 2
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0003723
IBA
Gene OntologyRNA binding4
GO:0003735
IDA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
Gene Ontologystructural constituent of ribosome4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
Gene Ontologycytosolic ribosome5
GO:0022627
IDA
GOA Databasecytosolic small ribosomal subunit
GO:0022627
HDA
IBA
Gene Ontologycytosolic small ribosomal subunit4 6
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol7
GO:0005840
IEA
GOA Databaseribosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005326 Plectin/S10, N-terminal
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR037447 40S Ribosomal protein S10
Mapman id Description
17.1.3.1.11 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS10