Gene: AT4G23860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G23860
  • Transcript Identifier AT4G23860.1
  • Gene Type Coding gene
  • Location Chr4 : 12409336-12411336 : positive

Gene Family Information

  • ID HOM05D005474
  • #Genes/#Species 140/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G23860.1
  • uniprot C0SVJ2

Descriptions

  • Description PHD finger protein-like protein
  • Computational description PHD finger protein-related; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, N-recognin (InterPro:IPR003126); Has 484 Blast hits to 449 proteins in 164 species: Archae - 0; Bacteria - 2; Metazoa - 240; Fungi - 124; Plants - 56; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
GOA Databaseprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0061630
IEA
Gene Ontologyubiquitin protein ligase activity
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005737
IDA
GOA Databasecytoplasm
GO:0005737
HDA
IBA
Gene Ontologycytoplasm1 2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011011 Zinc finger, FYVE/PHD-type
IPR003126 Zinc finger, UBR-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR040204 E3 ubiquitin-protein ligase UBR7
IPR001965 Zinc finger, PHD-type
Mapman id Description
35.1 not assigned.annotated