Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 1.4e-233 812.8 453 100.0
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 2.6e-216 755.4 454 93.6
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 7.8e-205 717.2 456 84.0
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 3.1e-193 678.7 455 73.2
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 2.9e-191 672.2 453 72.0
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 3.5e-189 665.2 453 71.7
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 2.3e-188 662.5 453 70.2
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 3.0e-188 662.1 453 70.2
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 4.3e-187 658.3 453 69.8
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 8.1e-186 654.1 453 69.3
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 8.1e-186 654.1 453 69.3
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 1.1e-185 653.7 453 69.5
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 9.9e-176 620.5 453 67.1
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 2.5e-171 605.9 456 65.1
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 1.6e-141 506.9 452 54.6
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 2.2e-135 486.5 453 54.1
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 3.8e-135 485.7 453 54.1
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 5.5e-134 481.9 446 52.5
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 1.2e-133 480.7 446 52.5
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 1.6e-133 480.3 446 52.7
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 2.7e-133 479.6 449 52.6
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 3.6e-133 479.2 462 51.9
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 7.9e-133 478.0 454 51.1
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 5.1e-132 475.3 467 49.9
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 2.0e-131 473.4 455 53.8
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 1.3e-130 470.7 454 50.4
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.8e-130 469.5 457 51.9
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 3.7e-130 469.2 454 51.8
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 6.3e-130 468.4 458 52.6
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 8.2e-130 468.0 475 49.3
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 3.1e-129 466.1 453 51.7
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 4.1e-129 465.7 473 51.2
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 4.1e-129 465.7 449 51.9
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 5.3e-129 465.3 463 51.0
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 9.1e-129 464.5 463 51.0
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 1.2e-128 464.2 464 48.7
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 2.6e-128 463.0 456 50.2
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 2.6e-128 463.0 466 50.4
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 4.5e-128 462.2 449 52.6
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 5.9e-128 461.8 456 50.9
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 1.0e-127 461.1 455 51.0
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 2.2e-127 459.9 453 51.0
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 3.8e-127 459.1 463 49.5
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 3.8e-127 459.1 448 51.8
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 3.8e-127 459.1 485 48.5
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 8.5e-127 458.0 456 49.6
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 1.4e-126 457.2 453 51.2
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.9e-126 456.8 449 51.2
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 5.5e-126 455.3 449 51.7
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 5.5e-126 455.3 456 51.1
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 5.5e-126 455.3 462 50.0
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 7.2e-126 454.9 461 49.5
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 9.4e-126 454.5 467 49.9
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 2.1e-125 453.4 452 51.1
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 3.6e-125 452.6 464 48.1
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 3.6e-125 452.6 464 48.1
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 3.6e-125 452.6 451 47.9
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 4.7e-125 452.2 451 48.3
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 8.0e-125 451.4 456 49.8
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 8.0e-125 451.4 462 50.4
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 6.7e-124 448.4 453 50.6
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 1.5e-123 447.2 451 51.2
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 1.5e-123 447.2 455 48.6
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 5.7e-123 445.3 460 48.7
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 7.4e-123 444.9 462 50.0
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 7.4e-123 444.9 457 48.6
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 9.7e-123 444.5 462 49.8
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 9.7e-123 444.5 470 48.7
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 2.8e-122 443.0 454 49.8
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.7e-122 442.6 461 49.7
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 3.7e-122 442.6 561 42.8
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 3.7e-122 442.6 455 47.7
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 4.8e-122 442.2 493 54.0
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.8e-122 442.2 462 49.8
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 6.3e-122 441.8 450 50.2
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 8.2e-122 441.4 450 50.0
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.1e-121 441.0 466 49.6
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.1e-121 439.5 457 49.2
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 3.1e-121 439.5 459 50.5
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 4.1e-121 439.1 466 52.8
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 1.2e-120 437.6 459 48.8
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 7.7e-120 434.9 448 48.0
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 1.7e-119 433.7 463 47.5
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.2e-119 433.3 446 48.9
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 2.9e-119 433.0 449 49.2
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 5.0e-119 432.2 445 49.7
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 8.5e-119 431.4 423 49.9
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 8.5e-119 431.4 448 48.7
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 1.5e-118 430.6 454 48.9
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 1.5e-118 430.6 449 47.0
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 5.5e-118 428.7 472 46.2
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 2.7e-117 426.4 456 48.9
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 4.7e-117 425.6 521 51.1
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 4.7e-117 425.6 447 47.0
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.0e-116 424.5 464 46.3
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 1.0e-116 424.5 432 50.7
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 3.0e-116 422.9 426 51.4
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 4.0e-116 422.5 450 51.1
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 6.7e-116 421.8 468 45.9
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 8.8e-116 421.4 448 47.3
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 1.2e-115 421.0 450 46.9
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 5.7e-115 418.7 449 46.5
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 1.4e-113 414.1 452 46.0
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 1.8e-113 413.7 437 48.5
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 7.0e-113 411.8 497 43.3
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 1.0e-111 407.9 432 47.5
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.9e-110 403.7 458 44.8
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 1.8e-108 397.1 414 49.8
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.2e-99 367.9 463 42.5
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 4.9e-98 362.5 450 43.1
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 9.5e-94 348.2 449 40.8
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.4e-92 344.4 449 42.3
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 5.2e-92 342.4 205 72.2
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 1.7e-90 337.4 206 71.4
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.1e-86 324.7 388 44.8
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.1e-86 324.7 388 44.8
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.1e-81 308.1 220 60.5
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 9.5e-78 295.0 168 75.6
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.5e-70 270.4 141 81.6
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 3.3e-70 270.0 429 35.7
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 4.4e-67 259.6 161 71.4
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 2.2e-66 257.3 450 36.0
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 1.4e-65 254.6 550 30.4
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 2.1e-64 250.8 369 40.1
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.2e-59 235.0 141 72.3
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 1.3e-53 214.9 121 74.4
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.6e-43 180.6 91 81.3
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 1.0e-31 142.1 76 78.9
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 2.6e-27 127.5 133 49.6
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 5.5e-25 119.8 279 28.7
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.7e-24 117.5 73 69.9
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.7e-24 117.5 73 69.9
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 3.6e-24 117.1 66 74.2
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 5.3e-20 103.2 57 71.9
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 5.9e-19 99.8 63 71.4
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 3.8e-18 97.1 69 59.4
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 4.7e-16 90.1 211 32.2
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 1.4e-07 62.0 61 55.7
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.1e-06 58.9 73 43.8


User provided reference genes

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