Gene: AT4G23850

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G23850
  • Transcript Identifier AT4G23850.1
  • Gene Type Coding gene
  • Location Chr4 : 12403720-12408263 : negative

Gene Family Information

  • ID HOM05D000324
  • #Genes/#Species 1429/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G23850.1
  • symbol LACS4
  • full_name long-chain acyl-CoA synthetase 4
  • uniprot Q9T0A0

Descriptions

  • Description AMP-dependent synthetase and ligase family protein
  • Computational description long-chain acyl-CoA synthetase 4 (LACS4); FUNCTIONS IN: catalytic activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT4G11030.1); Has 52797 Blast hits to 49694 proteins in 3271 species: Archae - 966; Bacteria - 33480; Metazoa - 2301; Fungi - 1946; Plants - 2035; Viruses - 1; Other Eukaryotes - 12068 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006631
IEA
GOA Databasefatty acid metabolic process
GO:0006631
TAS
Gene Ontologyfatty acid metabolic process1
GO:0006629
IEA
GOA Databaselipid metabolic process
GO:0001676
IEA
GOA Databaselong-chain fatty acid metabolic process
GO:0006633
TAS
Gene Ontologyfatty acid biosynthetic process2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016874
IEA
GOA Databaseligase activity
GO:0004467
IEA
GOA Databaselong-chain fatty acid-CoA ligase activity
GO:0004467
IDA
IBA
Gene Ontologylong-chain fatty acid-CoA ligase activity1 3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005794
IDA
GOA DatabaseGolgi apparatus
GO:0005794
HDA
Gene OntologyGolgi apparatus4
GO:0005634
ISM
Gene Ontologynucleus
GO:0016020
IBA
Gene Ontologymembrane3
GO:0005783
IBA
Gene Ontologyendoplasmic reticulum3
GO:0005829
RCA
Gene Ontologycytosol5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000873 AMP-dependent synthetase/ligase
IPR042099 ANL, N-terminal domain
Mapman id Description
50.6.2 Enzyme classification.EC_6 ligases.EC_6.2 ligase forming carbon-sulfur bond