Gene: AT4G15560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G15560
  • Transcript Identifier AT4G15560.1
  • Gene Type Coding gene
  • Location Chr4 : 8884218-8887254 : positive

Gene Family Information

  • ID HOM05D001154
  • #Genes/#Species 535/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G15560.1
  • symbol CLA1
  • Alias AtCLA1,CLA,DEF,DXPS2,1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2,DXS1,1-deoxy-D-xylulose 5-phosphate (DXP) synthase 1,DXS,1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE
  • full_name CLOROPLASTOS ALTERADOS 1
  • uniprot Q38854

Descriptions

  • Description Deoxyxylulose-5-phosphate synthase
  • Computational description CLOROPLASTOS ALTERADOS 1 (CLA1); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: chlorophyll biosynthetic process, response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475), Transketolase binding site (InterPro:IPR020826), Transketolase-like, C-terminal (InterPro:IPR015941), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: 1-deoxy-D-xylulose 5-phosphate synthase 1 (TAIR:AT3G21500.2); Has 24450 Blast hits to 24392 proteins in 2940 species: Archae - 267; Bacteria - 15281; Metazoa - 526; Fungi - 278; Plants - 446; Viruses - 0; Other Eukaryotes - 7652 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016114
IEA
Gene Ontologyterpenoid biosynthetic process
GO:0016114
IEA
InterProterpenoid biosynthetic process
GO:0009228
IEA
GOA Databasethiamine biosynthetic process
GO:0008299
IEA
GOA Databaseisoprenoid biosynthetic process
GO:0015995
IMP
IBA
Gene Ontologychlorophyll biosynthetic process1 2
GO:0019288
TAS
Gene Ontologyisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3
GO:0052865
IEA
Gene Ontology1-deoxy-D-xylulose 5-phosphate biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008661
IEA
GOA Database1-deoxy-D-xylulose-5-phosphate synthase activity
GO:0008661
IDA
Gene Ontology1-deoxy-D-xylulose-5-phosphate synthase activity1
GO:0008661
IEA
InterPro1-deoxy-D-xylulose-5-phosphate synthase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016744
IBA
Gene Ontologytransketolase or transaldolase activity2
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0042802
IPI
Gene Ontologyidentical protein binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM, IBA
Gene Ontologychloroplast2 6
GO:0009536
IEA
GOA Databaseplastid
GO:0009570
IEA
GOA Databasechloroplast stroma

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029061 Thiamin diphosphate-binding fold
IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II
IPR005477 Deoxyxylulose-5-phosphate synthase
IPR005475 Transketolase-like, pyrimidine-binding domain
IPR033248 Transketolase, C-terminal domain
Mapman id Description
9.1.2.2 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.1-deoxy-D-xylulose 5-phosphate synthase (DXS)