Gene: AT4G13350

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G13350
  • Transcript Identifier AT4G13350.2
  • Gene Type Coding gene
  • Location Chr4 : 7770170-7773321 : negative

Gene Family Information

  • ID HOM05D001437
  • #Genes/#Species 438/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G13350.2
  • symbol NIG
  • uniprot Q8W4K6

Descriptions

  • Description NSP (nuclear shuttle protein)-interacting GTPase
  • Computational description NSP (nuclear shuttle protein)-interacting GTPase (NIG); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: nucleocytoplasmic transport, response to virus; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: flower, root, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ArfGap/RecO-like zinc finger domain-containing protein (TAIR:AT4G32630.1); Has 7463 Blast hits to 6530 proteins in 396 species: Archae - 2; Bacteria - 285; Metazoa - 3343; Fungi - 1586; Plants - 848; Viruses - 60; Other Eukaryotes - 1339 (source: NCBI BLink).
  • Computational description NSP (nuclear shuttle protein)-interacting GTPase (NIG); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: nucleocytoplasmic transport, response to virus; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: flower, root, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ArfGap/RecO-like zinc finger domain-containing protein (TAIR:AT4G32630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006913
IDA
Gene Ontologynucleocytoplasmic transport1
GO:0009615
IMP
Gene Ontologyresponse to virus1
GO:0050790
IEA
GOA Databaseregulation of catalytic activity

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003924
IDA
Gene OntologyGTPase activity1
GO:0005525
IDA
Gene OntologyGTP binding1
GO:0005096
IEA
GOA DatabaseGTPase activator activity
GO:0005096
IEA
InterProGTPase activator activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IDA
ISM
Gene Ontologycytoplasm1
GO:0005829
IDA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044820 ADP-ribosylation factor GTPase-activating protein AGD14-like
IPR037278 ARFGAP/RecO-like zinc finger
IPR001164 Arf GTPase activating protein
IPR038508 ArfGAP domain superfamily
Mapman id Description
35.1 not assigned.annotated