Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001437', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p05720' => 'bna', 'A04p08800' => 'bna', 'A06p05630' => 'bna', 'A08p07010' => 'bna', 'Aa31LG8G11170' => 'aar', 'Aa31LG9G4400' => 'aar', 'Aa31sc20G220' => 'aar', 'Aa31sc91G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.364' => 'aag', 'Actinidia07417' => 'ach', 'Actinidia09409' => 'ach', 'Actinidia13292' => 'ach', 'Actinidia13858' => 'ach', 'Actinidia20344' => 'ach', 'Actinidia32689' => 'ach', 'Actinidia37838' => 'ach', 'Ah.12g062060' => 'amhyb', 'Ah.12g063080' => 'amhyb', 'Ah.14g081670' => 'amhyb', 'Ah.14g081680' => 'amhyb', 'AL1G19130' => 'aly', 'AL7G19130' => 'aly', 'AL9U10310' => 'aly', 'Aqoxy2G00065' => 'aox', 'Aqoxy7G01811' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15P38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61QI09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73LV1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7CLK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5LKUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV0YIE' => 'arhy', 'AT1G08680' => 'ath', 'AT4G13350' => 'ath', 'AT4G32630' => 'ath', 'ATR0037G054' => 'atr', 'ATR0068G023' => 'atr', 'Atru.chr2.1577' => 'acertr', 'Atru.chr7.1313' => 'acertr', 'Atru.chr7.2316' => 'acertr', 'AUR62011015' => 'cqu', 'AUR62021526' => 'cqu', 'AUR62024828' => 'cqu', 'AUR62032387' => 'cqu', 'AUR62036504' => 'cqu', 'AUR62037071' => 'cqu', 'BcaB03g16092' => 'bca', 'BcaB07g34108' => 'bca', 'BcaC02g09433' => 'bca', 'BcaC05g24796' => 'bca', 'BcaC07g37377' => 'bca', 'BcaC09g52056' => 'bca', 'BcaNung06955' => 'bca', 'BolC1t00628H' => 'bol', 'BolC4t25833H' => 'bol', 'BolC5t29437H' => 'bol', 'BolC8t47683H' => 'bol', 'BraA01t00542Z' => 'bra', 'BraA04t16573Z' => 'bra', 'BraA06t23772Z' => 'bra', 'BraA08t32710Z' => 'bra', 'C01p06300' => 'bna', 'C04p42690' => 'bna', 'C05p06780' => 'bna', 'C08p08300' => 'bna', 'CAN.G679.10' => 'can', 'CAN.G713.33' => 'can', 'CAN.G749.3' => 'can', 'CAN.G959.43' => 'can', 'CANSAT54G0023' => 'cansat', 'CANSAT56G0530' => 'cansat', 'CANSAT56G1349' => 'cansat', 'CANSAT78G1522' => 'cansat', 'CARHR008610' => 'chi', 'CARHR218900' => 'chi', 'CARHR240600' => 'chi', 'Carub.0001s0804' => 'cru', 'Carub.0007s0791' => 'cru', 'Carub.0007s2923' => 'cru', 'Ca_04457_v3' => 'car', 'Ca_12905_v3' => 'car', 'Ca_25439_v3' => 'car', 'Ca_25517_v3' => 'car', 'CBR_g21816' => 'cbr', 'Cc00_g04900' => 'ccan', 'Cc06_g09450' => 'ccan', 'Cc08_g08250' => 'ccan', 'CDE02G1040' => 'cde', 'CDE04G0677' => 'cde', 'CDE06G2637' => 'cde', 'CDE07G1079' => 'cde', 'CDE08G1382' => 'cde', 'CDE09G0794' => 'cde', 'Cfa003281' => 'cfa', 'Cfa013220' => 'cfa', 'Ciclev10007554m.g' => 'ccl', 'Ciclev10010498m.g' => 'ccl', 'Ciclev10030836m.g' => 'ccl', 'CiPaw.03G234400' => 'cil', 'CiPaw.04G166600' => 'cil', 'CiPaw.07G217000' => 'cil', 'CiPaw.08G016300' => 'cil', 'CiPaw.10G124600' => 'cil', 'ClCG05G017250' => 'cla', 'ClCG10G016700' => 'cla', 'ClCG11G002590' => 'cla', 'COL.COLO4_24073' => 'col', 'COL.COLO4_30345' => 'col', 'COL.COLO4_34887' => 'col', 'COL.COLO4_38560' => 'col', 'Cpa.g.sc205.35' => 'cpa', 'Cpa.g.sc23.124' => 'cpa', 'Cpa.g.sc73.19' => 'cpa', 'Cpa.g.sc91.2' => 'cpa', 'Cre06.g302900' => 'cre', 'CsaV3_2G002390' => 'csa', 'CsaV3_3G039660' => 'csa', 'CsaV3_3G046730' => 'csa', 'CSS0011204' => 'camsi', 'CSS0012476' => 'camsi', 'CSS0017855' => 'camsi', 'CSS0032954' => 'camsi', 'CSS0033969' => 'camsi', 'CSS0034517' => 'camsi', 'CSS0038503' => 'camsi', 'CSS0043534' => 'camsi', 'CSS0046561' => 'camsi', 'CSS0049489' => 'camsi', 'DCAR_001495' => 'dca', 'DCAR_006260' => 'dca', 'DCAR_009088' => 'dca', 'DCAR_013499' => 'dca', 'DCAR_017829' => 'dca', 'DCAR_024706' => 'dca', 'DCAR_031958' => 'dca', 'Dinv30218' => 'din', 'Dinv30219' => 'din', 'Dinv30523' => 'din', 'Dinv35876' => 'din', 'Dinv36609' => 'din', 'Dinv37037' => 'din', 'Dinv41584' => 'din', 'Duzib106G0268' => 'dzi', 'Duzib128G0706' => 'dzi', 'Duzib150G0759' => 'dzi', 'Duzib168G2108' => 'dzi', 'Duzib187G0293' => 'dzi', 'ECA234G0831' => 'eca', 'ECA236G0736' => 'eca', 'ECA240G0084' => 'eca', 'EL10Ac2g02531' => 'bvu', 'EL10Ac8g18522' => 'bvu', 'EL10Ac8g19573' => 'bvu', 'EL10Ac9g21591' => 'bvu', 'Eucgr.A01700' => 'egr', 'Eucgr.C01068' => 'egr', 'Eucgr.K01548' => 'egr', 'FAN15G0311' => 'fan', 'FAN19G0712' => 'fan', 'FAN19G0786' => 'fan', 'FAN20G2175' => 'fan', 'FAN23G2212' => 'fan', 'FAN24G0293' => 'fan', 'FAN26G1169' => 'fan', 'FAN26G1470' => 'fan', 'FAN26G2075' => 'fan', 'FAN27G0132' => 'fan', 'FAN28G0104' => 'fan', 'FAN28G1375' => 'fan', 'FvH4_1g05240' => 'fve', 'FvH4_1g29630' => 'fve', 'FvH4_2g30220' => 'fve', 'Glyma.03G006000' => 'gma', 'Glyma.05G088000' => 'gma', 'Glyma.05G232200' => 'gma', 'Glyma.07G088500' => 'gma', 'Glyma.08G039600' => 'gma', 'Glyma.09G188300' => 'gma', 'Glyma.14G129900' => 'gma', 'Glyma.17G203600' => 'gma', 'Glyma.19G067400' => 'gma', 'Glyma.19G120051' => 'gma', 'Gohir.A05G011100' => 'ghi', 'Gohir.A05G021800' => 'ghi', 'Gohir.A06G048300' => 'ghi', 'Gohir.A06G060900' => 'ghi', 'Gohir.A08G240700' => 'ghi', 'Gohir.A09G083901' => 'ghi', 'Gohir.A11G224206' => 'ghi', 'Gohir.A11G300500' => 'ghi', 'Gohir.D05G011800' => 'ghi', 'Gohir.D05G023400' => 'ghi', 'Gohir.D06G048300' => 'ghi', 'Gohir.D06G059300' => 'ghi', 'Gohir.D08G261400' => 'ghi', 'Gohir.D09G083700' => 'ghi', 'Gohir.D11G237800' => 'ghi', 'Gohir.D11G315300' => 'ghi', 'Gorai.004G279500' => 'gra', 'Gorai.006G099600' => 'gra', 'Gorai.006G099700' => 'gra', 'Gorai.007G251300' => 'gra', 'Gorai.007G346500' => 'gra', 'Gorai.009G012100' => 'gra', 'Gorai.009G023500' => 'gra', 'Gorai.010G054100' => 'gra', 'Gorai.010G069100' => 'gra', 'GSVIVG01015419001' => 'vvi', 'GSVIVG01017129001' => 'vvi', 'GSVIVG01029915001' => 'vvi', 'GSVIVG01035737001' => 'vvi', 'HanXRQChr03g0061951' => 'han', 'HanXRQChr04g0125501' => 'han', 'HanXRQChr06g0178091' => 'han', 'HanXRQChr09g0239781' => 'han', 'HanXRQChr09g0239801' => 'han', 'HanXRQChr10g0317821' => 'han', 'Haze_20375' => 'cav', 'Haze_21635' => 'cav', 'Haze_25691' => 'cav', 'Hma1.2p1_0018F.1_g013230' => 'hma', 'Hma1.2p1_0165F.1_g073400' => 'hma', 'Hma1.2p1_0175F.1_g077322' => 'hma', 'Hma1.2p1_0175F.1_g077324' => 'hma', 'Hma1.2p1_1215F.1_g267620' => 'hma', 'HPP92_002910' => 'vpl', 'HPP92_002911' => 'vpl', 'HPP92_005546' => 'vpl', 'Hund09192' => 'sun', 'Hund25655' => 'sun', 'Hund26136' => 'sun', 'Lalb_Chr02g0157591' => 'lal', 'Lalb_Chr05g0222691' => 'lal', 'Lalb_Chr06g0174161' => 'lal', 'Lalb_Chr08g0243741' => 'lal', 'Lalb_Chr08g0243751' => 'lal', 'Lalb_Chr09g0331141' => 'lal', 'Lalb_Chr14g0371371' => 'lal', 'Lalb_Chr22g0352941' => 'lal', 'Lj2A416G33' => 'lonja', 'Lj2g0022086' => 'lja', 'Lj2g0023387' => 'lja', 'Lj4g0011940' => 'lja', 'Lj5g0013721' => 'lja', 'Lj7A646G40' => 'lonja', 'Lj7A646G41' => 'lonja', 'Lj7A711G47' => 'lonja', 'Lj7A711T50' => 'lonja', 'Lj8A609T42' => 'lonja', 'Lsat_1_v5_gn_1_125940' => 'lsa', 'Lsat_1_v5_gn_3_80100' => 'lsa', 'Lsat_1_v5_gn_5_1000' => 'lsa', 'Lsat_1_v5_gn_7_42361' => 'lsa', 'Lsat_1_v5_gn_8_83661' => 'lsa', 'Manes.03G067000' => 'mes', 'Manes.08G150600' => 'mes', 'Manes.09G135500' => 'mes', 'Manes.16G068700' => 'mes', 'Manes.16G070500' => 'mes', 'Mapoly0032s0108' => 'mpo', 'MBI01_g16636_MAGBIO' => 'mbi', 'MBI02_g07510_MAGBIO' => 'mbi', 'MBI04_g40088_MAGBIO' => 'mbi', 'MBI19_g30306_MAGBIO' => 'mbi', 'MBI19_g32310_MAGBIO' => 'mbi', 'MBI19_g40248_MAGBIO' => 'mbi', 'MCO11G774' => 'mco', 'MD02G1063100' => 'mdo', 'MD08G1135500' => 'mdo', 'MD12G1014100' => 'mdo', 'MD14G1011500' => 'mdo', 'MD15G1114500' => 'mdo', 'MD15G1188600' => 'mdo', 'Medtr1g010280' => 'mtr', 'Medtr4g025560' => 'mtr', 'Medtr6g027300' => 'mtr', 'Medtr6g086630' => 'mtr', 'Medtr8g103750' => 'mtr', 'MELO3C003662.2' => 'cme', 'MELO3C004547.2' => 'cme', 'MELO3C009707.2' => 'cme', 'Migut.A00267' => 'egut', 'Migut.J01581' => 'egut', 'Migut.K00184' => 'egut', 'Migut.K00462' => 'egut', 'Migut.L00406' => 'egut', 'MSTRG.10681' => 'ama', 'MSTRG.19757' => 'ama', 'MSTRG.6272' => 'ama', 'Nitab4.5_0000123g0070' => 'nta', 'Nitab4.5_0000125g0400' => 'nta', 'Nitab4.5_0001672g0150' => 'nta', 'Nitab4.5_0005047g0020' => 'nta', 'Nitab4.5_0007999g0030' => 'nta', 'Nitab4.5_0009945g0030' => 'nta', 'Nn2g11804' => 'nnu', 'Nn2g14730' => 'nnu', 'Nn8g39251' => 'nnu', 'Oeu018265.1' => 'oeu', 'Oeu023032.1' => 'oeu', 'Oeu027163.1' => 'oeu', 'Oeu027164.1' => 'oeu', 'Oeu044219.1' => 'oeu', 'Oeu045172.1' => 'oeu', 'Oeu048662.2' => 'oeu', 'Os01g0813900' => 'osa', 'Os02g0208900' => 'osa', 'Os03g0323500' => 'osa', 'Os05g0534800' => 'osa', 'Peaxi162Scf00003g05391' => 'pax', 'Peaxi162Scf00105g01225' => 'pax', 'Peaxi162Scf00546g00325' => 'pax', 'Peaxi162Scf00560g00513' => 'pax', 'PGR044G0999' => 'pgr', 'PGR142G2142' => 'pgr', 'PGR142G2361' => 'pgr', 'PGSC0003DMG400000322' => 'stu', 'PGSC0003DMG400007207' => 'stu', 'PGSC0003DMG400014483' => 'stu', 'Phvul.001G056000' => 'pvu', 'Phvul.002G314400' => 'pvu', 'Phvul.002G314500' => 'pvu', 'Phvul.004G052500' => 'pvu', 'Potri.006G246100' => 'ptr', 'Potri.013G068300' => 'ptr', 'Potri.018G035000' => 'ptr', 'Potri.018G076200' => 'ptr', 'Pp3c10_10670' => 'ppa', 'Pp3c14_22720' => 'ppa', 'Pp3c1_39920' => 'ppa', 'Pp3c1_70' => 'ppa', 'Pp3c2_28440' => 'ppa', 'PRCOL_00005201' => 'pco', 'Prupe.1G466000' => 'ppe', 'Prupe.7G026600' => 'ppe', 'Prupe.7G227900' => 'ppe', 'Psat1g039840' => 'psa', 'Psat1g088560' => 'psa', 'Psat6g031160' => 'psa', 'Psat7g014040' => 'psa', 'PSO063G5179' => 'pso', 'PSO210G5730' => 'pso', 'PSO210G6127' => 'pso', 'PSO541G0531' => 'pso', 'PSO675G2600' => 'pso', 'PSO782G3465' => 'pso', 'QL02p085888' => 'qlo', 'QL07p016355' => 'qlo', 'QL07p016401' => 'qlo', 'QL12p031169' => 'qlo', 'RcHm_v2.0_Chr2g0090971' => 'rch', 'RcHm_v2.0_Chr3g0495661' => 'rch', 'RcHm_v2.0_Chr6g0312661' => 'rch', 'Rhsim02G0186900' => 'rsi', 'Rhsim03G0045400' => 'rsi', 'Rhsim03G0244400' => 'rsi', 'Sabra06G0192600' => 'sbr', 'Sabra13G0059600' => 'sbr', 'Sabra18G0035800' => 'sbr', 'Sabra18G0064900' => 'sbr', 'SalBow1G0918' => 'sbo', 'SalBow1G5635' => 'sbo', 'SalBow1G7355' => 'sbo', 'SalBow2G0895' => 'sbo', 'SalBow4G3273' => 'sbo', 'SalBow6G5163' => 'sbo', 'Sc08g0007330' => 'sci', 'Sc18g0001100' => 'sci', 'Sc23g0005800' => 'sci', 'Sc23g0005810' => 'sci', 'Sed0000587' => 'sed', 'Sed0000855' => 'sed', 'Sed0021010' => 'sed', 'Sed0023292' => 'sed', 'SEGI_01593' => 'sgi', 'SEGI_02777' => 'sgi', 'SEGI_32372' => 'sgi', 'SGA_v2.0_scaffold106G30577' => 'sas', 'SGA_v2.0_scaffold109G31040' => 'sas', 'SGA_v2.0_scaffold240G44154' => 'sas', 'SGA_v2.0_scaffold27G11504' => 'sas', 'SHI02629' => 'shi', 'SHI14842' => 'shi', 'SMO351G0452' => 'smo', 'Solyc08g067930.4' => 'sly', 'Solyc10g076990.3' => 'sly', 'Solyc12g006990.2' => 'sly', 'Sopen08g021840' => 'spe', 'Sopen10g028670' => 'spe', 'Sopen12g002950' => 'spe', 'Sp1g07340' => 'spa', 'Sp7g10920' => 'spa', 'Sp7g30400' => 'spa', 'TAR383G0599' => 'tar', 'TAR586G0001' => 'tar', 'TAR586G0002' => 'tar', 'TAR624G0085' => 'tar', 'TAR636G1076' => 'tar', 'TAR636G2605' => 'tar', 'THA.LOC104804514' => 'tha', 'THA.LOC104808754' => 'tha', 'THA.LOC104821335' => 'tha', 'THA.LOC104823770' => 'tha', 'Thecc.05G237700' => 'tca', 'Thecc.06G084200' => 'tca', 'Thecc.09G113500' => 'tca', 'Thecc.09G143600' => 'tca', 'Thhalv10007026m.g' => 'esa', 'Thhalv10024655m.g' => 'esa', 'Thhalv10024713m.g' => 'esa', 'TPR.G21675' => 'tpr', 'TPR.G33939' => 'tpr', 'TPR.G38992' => 'tpr', 'TWI32G0814' => 'twi', 'TWI32G1313' => 'twi', 'TWI34G1393' => 'twi', 'TWI34G1746' => 'twi', 'TWI60G0413' => 'twi', 'TWI63G1217' => 'twi', 'unitig_0.g2729' => 'ugi', 'unitig_37.g12222' => 'ugi', 'vmacro06202' => 'vma', 'vmacro07632' => 'vma', 'vmacro11110' => 'vma', 'vmacro20662' => 'vma', 'VMungo0251G3166' => 'vmu', 'VMungo0251G3488' => 'vmu', 'VMungo0331G1876' => 'vmu', 'VMungo0464G1186' => 'vmu', 'VMungo0647G2223' => 'vmu', 'Zm00001eb015390' => 'zma', 'Zm00001eb087140' => 'zma', 'Zm00001eb091340' => 'zma', 'Zm00001eb114590' => 'zma', 'Zm00001eb149950' => 'zma', 'Zm00001eb205450' => 'zma', 'Zm00001eb240400' => 'zma', 'Zm00001eb293940' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001437', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001437' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001437', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001437' ) ), 'genes' => array( 'A01p05720' => 'bna', 'A04p08800' => 'bna', 'A06p05630' => 'bna', 'A08p07010' => 'bna', 'Aa31LG8G11170' => 'aar', 'Aa31LG9G4400' => 'aar', 'Aa31sc20G220' => 'aar', 'Aa31sc91G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.364' => 'aag', 'Actinidia07417' => 'ach', 'Actinidia09409' => 'ach', 'Actinidia13292' => 'ach', 'Actinidia13858' => 'ach', 'Actinidia20344' => 'ach', 'Actinidia32689' => 'ach', 'Actinidia37838' => 'ach', 'Ah.12g062060' => 'amhyb', 'Ah.12g063080' => 'amhyb', 'Ah.14g081670' => 'amhyb', 'Ah.14g081680' => 'amhyb', 'AL1G19130' => 'aly', 'AL7G19130' => 'aly', 'AL9U10310' => 'aly', 'Aqoxy2G00065' => 'aox', 'Aqoxy7G01811' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15P38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61QI09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73LV1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7CLK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5LKUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV0YIE' => 'arhy', 'AT1G08680' => 'ath', 'AT4G13350' => 'ath', 'AT4G32630' => 'ath', 'ATR0037G054' => 'atr', 'ATR0068G023' => 'atr', 'Atru.chr2.1577' => 'acertr', 'Atru.chr7.1313' => 'acertr', 'Atru.chr7.2316' => 'acertr', 'AUR62011015' => 'cqu', 'AUR62021526' => 'cqu', 'AUR62024828' => 'cqu', 'AUR62032387' => 'cqu', 'AUR62036504' => 'cqu', 'AUR62037071' => 'cqu', 'BcaB03g16092' => 'bca', 'BcaB07g34108' => 'bca', 'BcaC02g09433' => 'bca', 'BcaC05g24796' => 'bca', 'BcaC07g37377' => 'bca', 'BcaC09g52056' => 'bca', 'BcaNung06955' => 'bca', 'BolC1t00628H' => 'bol', 'BolC4t25833H' => 'bol', 'BolC5t29437H' => 'bol', 'BolC8t47683H' => 'bol', 'BraA01t00542Z' => 'bra', 'BraA04t16573Z' => 'bra', 'BraA06t23772Z' => 'bra', 'BraA08t32710Z' => 'bra', 'C01p06300' => 'bna', 'C04p42690' => 'bna', 'C05p06780' => 'bna', 'C08p08300' => 'bna', 'CAN.G679.10' => 'can', 'CAN.G713.33' => 'can', 'CAN.G749.3' => 'can', 'CAN.G959.43' => 'can', 'CANSAT54G0023' => 'cansat', 'CANSAT56G0530' => 'cansat', 'CANSAT56G1349' => 'cansat', 'CANSAT78G1522' => 'cansat', 'CARHR008610' => 'chi', 'CARHR218900' => 'chi', 'CARHR240600' => 'chi', 'Carub.0001s0804' => 'cru', 'Carub.0007s0791' => 'cru', 'Carub.0007s2923' => 'cru', 'Ca_04457_v3' => 'car', 'Ca_12905_v3' => 'car', 'Ca_25439_v3' => 'car', 'Ca_25517_v3' => 'car', 'CBR_g21816' => 'cbr', 'Cc00_g04900' => 'ccan', 'Cc06_g09450' => 'ccan', 'Cc08_g08250' => 'ccan', 'CDE02G1040' => 'cde', 'CDE04G0677' => 'cde', 'CDE06G2637' => 'cde', 'CDE07G1079' => 'cde', 'CDE08G1382' => 'cde', 'CDE09G0794' => 'cde', 'Cfa003281' => 'cfa', 'Cfa013220' => 'cfa', 'Ciclev10007554m.g' => 'ccl', 'Ciclev10010498m.g' => 'ccl', 'Ciclev10030836m.g' => 'ccl', 'CiPaw.03G234400' => 'cil', 'CiPaw.04G166600' => 'cil', 'CiPaw.07G217000' => 'cil', 'CiPaw.08G016300' => 'cil', 'CiPaw.10G124600' => 'cil', 'ClCG05G017250' => 'cla', 'ClCG10G016700' => 'cla', 'ClCG11G002590' => 'cla', 'COL.COLO4_24073' => 'col', 'COL.COLO4_30345' => 'col', 'COL.COLO4_34887' => 'col', 'COL.COLO4_38560' => 'col', 'Cpa.g.sc205.35' => 'cpa', 'Cpa.g.sc23.124' => 'cpa', 'Cpa.g.sc73.19' => 'cpa', 'Cpa.g.sc91.2' => 'cpa', 'Cre06.g302900' => 'cre', 'CsaV3_2G002390' => 'csa', 'CsaV3_3G039660' => 'csa', 'CsaV3_3G046730' => 'csa', 'CSS0011204' => 'camsi', 'CSS0012476' => 'camsi', 'CSS0017855' => 'camsi', 'CSS0032954' => 'camsi', 'CSS0033969' => 'camsi', 'CSS0034517' => 'camsi', 'CSS0038503' => 'camsi', 'CSS0043534' => 'camsi', 'CSS0046561' => 'camsi', 'CSS0049489' => 'camsi', 'DCAR_001495' => 'dca', 'DCAR_006260' => 'dca', 'DCAR_009088' => 'dca', 'DCAR_013499' => 'dca', 'DCAR_017829' => 'dca', 'DCAR_024706' => 'dca', 'DCAR_031958' => 'dca', 'Dinv30218' => 'din', 'Dinv30219' => 'din', 'Dinv30523' => 'din', 'Dinv35876' => 'din', 'Dinv36609' => 'din', 'Dinv37037' => 'din', 'Dinv41584' => 'din', 'Duzib106G0268' => 'dzi', 'Duzib128G0706' => 'dzi', 'Duzib150G0759' => 'dzi', 'Duzib168G2108' => 'dzi', 'Duzib187G0293' => 'dzi', 'ECA234G0831' => 'eca', 'ECA236G0736' => 'eca', 'ECA240G0084' => 'eca', 'EL10Ac2g02531' => 'bvu', 'EL10Ac8g18522' => 'bvu', 'EL10Ac8g19573' => 'bvu', 'EL10Ac9g21591' => 'bvu', 'Eucgr.A01700' => 'egr', 'Eucgr.C01068' => 'egr', 'Eucgr.K01548' => 'egr', 'FAN15G0311' => 'fan', 'FAN19G0712' => 'fan', 'FAN19G0786' => 'fan', 'FAN20G2175' => 'fan', 'FAN23G2212' => 'fan', 'FAN24G0293' => 'fan', 'FAN26G1169' => 'fan', 'FAN26G1470' => 'fan', 'FAN26G2075' => 'fan', 'FAN27G0132' => 'fan', 'FAN28G0104' => 'fan', 'FAN28G1375' => 'fan', 'FvH4_1g05240' => 'fve', 'FvH4_1g29630' => 'fve', 'FvH4_2g30220' => 'fve', 'Glyma.03G006000' => 'gma', 'Glyma.05G088000' => 'gma', 'Glyma.05G232200' => 'gma', 'Glyma.07G088500' => 'gma', 'Glyma.08G039600' => 'gma', 'Glyma.09G188300' => 'gma', 'Glyma.14G129900' => 'gma', 'Glyma.17G203600' => 'gma', 'Glyma.19G067400' => 'gma', 'Glyma.19G120051' => 'gma', 'Gohir.A05G011100' => 'ghi', 'Gohir.A05G021800' => 'ghi', 'Gohir.A06G048300' => 'ghi', 'Gohir.A06G060900' => 'ghi', 'Gohir.A08G240700' => 'ghi', 'Gohir.A09G083901' => 'ghi', 'Gohir.A11G224206' => 'ghi', 'Gohir.A11G300500' => 'ghi', 'Gohir.D05G011800' => 'ghi', 'Gohir.D05G023400' => 'ghi', 'Gohir.D06G048300' => 'ghi', 'Gohir.D06G059300' => 'ghi', 'Gohir.D08G261400' => 'ghi', 'Gohir.D09G083700' => 'ghi', 'Gohir.D11G237800' => 'ghi', 'Gohir.D11G315300' => 'ghi', 'Gorai.004G279500' => 'gra', 'Gorai.006G099600' => 'gra', 'Gorai.006G099700' => 'gra', 'Gorai.007G251300' => 'gra', 'Gorai.007G346500' => 'gra', 'Gorai.009G012100' => 'gra', 'Gorai.009G023500' => 'gra', 'Gorai.010G054100' => 'gra', 'Gorai.010G069100' => 'gra', 'GSVIVG01015419001' => 'vvi', 'GSVIVG01017129001' => 'vvi', 'GSVIVG01029915001' => 'vvi', 'GSVIVG01035737001' => 'vvi', 'HanXRQChr03g0061951' => 'han', 'HanXRQChr04g0125501' => 'han', 'HanXRQChr06g0178091' => 'han', 'HanXRQChr09g0239781' => 'han', 'HanXRQChr09g0239801' => 'han', 'HanXRQChr10g0317821' => 'han', 'Haze_20375' => 'cav', 'Haze_21635' => 'cav', 'Haze_25691' => 'cav', 'Hma1.2p1_0018F.1_g013230' => 'hma', 'Hma1.2p1_0165F.1_g073400' => 'hma', 'Hma1.2p1_0175F.1_g077322' => 'hma', 'Hma1.2p1_0175F.1_g077324' => 'hma', 'Hma1.2p1_1215F.1_g267620' => 'hma', 'HPP92_002910' => 'vpl', 'HPP92_002911' => 'vpl', 'HPP92_005546' => 'vpl', 'Hund09192' => 'sun', 'Hund25655' => 'sun', 'Hund26136' => 'sun', 'Lalb_Chr02g0157591' => 'lal', 'Lalb_Chr05g0222691' => 'lal', 'Lalb_Chr06g0174161' => 'lal', 'Lalb_Chr08g0243741' => 'lal', 'Lalb_Chr08g0243751' => 'lal', 'Lalb_Chr09g0331141' => 'lal', 'Lalb_Chr14g0371371' => 'lal', 'Lalb_Chr22g0352941' => 'lal', 'Lj2A416G33' => 'lonja', 'Lj2g0022086' => 'lja', 'Lj2g0023387' => 'lja', 'Lj4g0011940' => 'lja', 'Lj5g0013721' => 'lja', 'Lj7A646G40' => 'lonja', 'Lj7A646G41' => 'lonja', 'Lj7A711G47' => 'lonja', 'Lj7A711T50' => 'lonja', 'Lj8A609T42' => 'lonja', 'Lsat_1_v5_gn_1_125940' => 'lsa', 'Lsat_1_v5_gn_3_80100' => 'lsa', 'Lsat_1_v5_gn_5_1000' => 'lsa', 'Lsat_1_v5_gn_7_42361' => 'lsa', 'Lsat_1_v5_gn_8_83661' => 'lsa', 'Manes.03G067000' => 'mes', 'Manes.08G150600' => 'mes', 'Manes.09G135500' => 'mes', 'Manes.16G068700' => 'mes', 'Manes.16G070500' => 'mes', 'Mapoly0032s0108' => 'mpo', 'MBI01_g16636_MAGBIO' => 'mbi', 'MBI02_g07510_MAGBIO' => 'mbi', 'MBI04_g40088_MAGBIO' => 'mbi', 'MBI19_g30306_MAGBIO' => 'mbi', 'MBI19_g32310_MAGBIO' => 'mbi', 'MBI19_g40248_MAGBIO' => 'mbi', 'MCO11G774' => 'mco', 'MD02G1063100' => 'mdo', 'MD08G1135500' => 'mdo', 'MD12G1014100' => 'mdo', 'MD14G1011500' => 'mdo', 'MD15G1114500' => 'mdo', 'MD15G1188600' => 'mdo', 'Medtr1g010280' => 'mtr', 'Medtr4g025560' => 'mtr', 'Medtr6g027300' => 'mtr', 'Medtr6g086630' => 'mtr', 'Medtr8g103750' => 'mtr', 'MELO3C003662.2' => 'cme', 'MELO3C004547.2' => 'cme', 'MELO3C009707.2' => 'cme', 'Migut.A00267' => 'egut', 'Migut.J01581' => 'egut', 'Migut.K00184' => 'egut', 'Migut.K00462' => 'egut', 'Migut.L00406' => 'egut', 'MSTRG.10681' => 'ama', 'MSTRG.19757' => 'ama', 'MSTRG.6272' => 'ama', 'Nitab4.5_0000123g0070' => 'nta', 'Nitab4.5_0000125g0400' => 'nta', 'Nitab4.5_0001672g0150' => 'nta', 'Nitab4.5_0005047g0020' => 'nta', 'Nitab4.5_0007999g0030' => 'nta', 'Nitab4.5_0009945g0030' => 'nta', 'Nn2g11804' => 'nnu', 'Nn2g14730' => 'nnu', 'Nn8g39251' => 'nnu', 'Oeu018265.1' => 'oeu', 'Oeu023032.1' => 'oeu', 'Oeu027163.1' => 'oeu', 'Oeu027164.1' => 'oeu', 'Oeu044219.1' => 'oeu', 'Oeu045172.1' => 'oeu', 'Oeu048662.2' => 'oeu', 'Os01g0813900' => 'osa', 'Os02g0208900' => 'osa', 'Os03g0323500' => 'osa', 'Os05g0534800' => 'osa', 'Peaxi162Scf00003g05391' => 'pax', 'Peaxi162Scf00105g01225' => 'pax', 'Peaxi162Scf00546g00325' => 'pax', 'Peaxi162Scf00560g00513' => 'pax', 'PGR044G0999' => 'pgr', 'PGR142G2142' => 'pgr', 'PGR142G2361' => 'pgr', 'PGSC0003DMG400000322' => 'stu', 'PGSC0003DMG400007207' => 'stu', 'PGSC0003DMG400014483' => 'stu', 'Phvul.001G056000' => 'pvu', 'Phvul.002G314400' => 'pvu', 'Phvul.002G314500' => 'pvu', 'Phvul.004G052500' => 'pvu', 'Potri.006G246100' => 'ptr', 'Potri.013G068300' => 'ptr', 'Potri.018G035000' => 'ptr', 'Potri.018G076200' => 'ptr', 'Pp3c10_10670' => 'ppa', 'Pp3c14_22720' => 'ppa', 'Pp3c1_39920' => 'ppa', 'Pp3c1_70' => 'ppa', 'Pp3c2_28440' => 'ppa', 'PRCOL_00005201' => 'pco', 'Prupe.1G466000' => 'ppe', 'Prupe.7G026600' => 'ppe', 'Prupe.7G227900' => 'ppe', 'Psat1g039840' => 'psa', 'Psat1g088560' => 'psa', 'Psat6g031160' => 'psa', 'Psat7g014040' => 'psa', 'PSO063G5179' => 'pso', 'PSO210G5730' => 'pso', 'PSO210G6127' => 'pso', 'PSO541G0531' => 'pso', 'PSO675G2600' => 'pso', 'PSO782G3465' => 'pso', 'QL02p085888' => 'qlo', 'QL07p016355' => 'qlo', 'QL07p016401' => 'qlo', 'QL12p031169' => 'qlo', 'RcHm_v2.0_Chr2g0090971' => 'rch', 'RcHm_v2.0_Chr3g0495661' => 'rch', 'RcHm_v2.0_Chr6g0312661' => 'rch', 'Rhsim02G0186900' => 'rsi', 'Rhsim03G0045400' => 'rsi', 'Rhsim03G0244400' => 'rsi', 'Sabra06G0192600' => 'sbr', 'Sabra13G0059600' => 'sbr', 'Sabra18G0035800' => 'sbr', 'Sabra18G0064900' => 'sbr', 'SalBow1G0918' => 'sbo', 'SalBow1G5635' => 'sbo', 'SalBow1G7355' => 'sbo', 'SalBow2G0895' => 'sbo', 'SalBow4G3273' => 'sbo', 'SalBow6G5163' => 'sbo', 'Sc08g0007330' => 'sci', 'Sc18g0001100' => 'sci', 'Sc23g0005800' => 'sci', 'Sc23g0005810' => 'sci', 'Sed0000587' => 'sed', 'Sed0000855' => 'sed', 'Sed0021010' => 'sed', 'Sed0023292' => 'sed', 'SEGI_01593' => 'sgi', 'SEGI_02777' => 'sgi', 'SEGI_32372' => 'sgi', 'SGA_v2.0_scaffold106G30577' => 'sas', 'SGA_v2.0_scaffold109G31040' => 'sas', 'SGA_v2.0_scaffold240G44154' => 'sas', 'SGA_v2.0_scaffold27G11504' => 'sas', 'SHI02629' => 'shi', 'SHI14842' => 'shi', 'SMO351G0452' => 'smo', 'Solyc08g067930.4' => 'sly', 'Solyc10g076990.3' => 'sly', 'Solyc12g006990.2' => 'sly', 'Sopen08g021840' => 'spe', 'Sopen10g028670' => 'spe', 'Sopen12g002950' => 'spe', 'Sp1g07340' => 'spa', 'Sp7g10920' => 'spa', 'Sp7g30400' => 'spa', 'TAR383G0599' => 'tar', 'TAR586G0001' => 'tar', 'TAR586G0002' => 'tar', 'TAR624G0085' => 'tar', 'TAR636G1076' => 'tar', 'TAR636G2605' => 'tar', 'THA.LOC104804514' => 'tha', 'THA.LOC104808754' => 'tha', 'THA.LOC104821335' => 'tha', 'THA.LOC104823770' => 'tha', 'Thecc.05G237700' => 'tca', 'Thecc.06G084200' => 'tca', 'Thecc.09G113500' => 'tca', 'Thecc.09G143600' => 'tca', 'Thhalv10007026m.g' => 'esa', 'Thhalv10024655m.g' => 'esa', 'Thhalv10024713m.g' => 'esa', 'TPR.G21675' => 'tpr', 'TPR.G33939' => 'tpr', 'TPR.G38992' => 'tpr', 'TWI32G0814' => 'twi', 'TWI32G1313' => 'twi', 'TWI34G1393' => 'twi', 'TWI34G1746' => 'twi', 'TWI60G0413' => 'twi', 'TWI63G1217' => 'twi', 'unitig_0.g2729' => 'ugi', 'unitig_37.g12222' => 'ugi', 'vmacro06202' => 'vma', 'vmacro07632' => 'vma', 'vmacro11110' => 'vma', 'vmacro20662' => 'vma', 'VMungo0251G3166' => 'vmu', 'VMungo0251G3488' => 'vmu', 'VMungo0331G1876' => 'vmu', 'VMungo0464G1186' => 'vmu', 'VMungo0647G2223' => 'vmu', 'Zm00001eb015390' => 'zma', 'Zm00001eb087140' => 'zma', 'Zm00001eb091340' => 'zma', 'Zm00001eb114590' => 'zma', 'Zm00001eb149950' => 'zma', 'Zm00001eb205450' => 'zma', 'Zm00001eb240400' => 'zma', 'Zm00001eb293940' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001437' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001437' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001437' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001437' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001437', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p05720' => 'bna', 'A04p08800' => 'bna', 'A06p05630' => 'bna', 'A08p07010' => 'bna', 'Aa31LG8G11170' => 'aar', 'Aa31LG9G4400' => 'aar', 'Aa31sc20G220' => 'aar', 'Aa31sc91G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.364' => 'aag', 'Actinidia07417' => 'ach', 'Actinidia09409' => 'ach', 'Actinidia13292' => 'ach', 'Actinidia13858' => 'ach', 'Actinidia20344' => 'ach', 'Actinidia32689' => 'ach', 'Actinidia37838' => 'ach', 'Ah.12g062060' => 'amhyb', 'Ah.12g063080' => 'amhyb', 'Ah.14g081670' => 'amhyb', 'Ah.14g081680' => 'amhyb', 'AL1G19130' => 'aly', 'AL7G19130' => 'aly', 'AL9U10310' => 'aly', 'Aqoxy2G00065' => 'aox', 'Aqoxy7G01811' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15P38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61QI09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73LV1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7CLK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5LKUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV0YIE' => 'arhy', 'AT1G08680' => 'ath', 'AT4G13350' => 'ath', 'AT4G32630' => 'ath', 'ATR0037G054' => 'atr', 'ATR0068G023' => 'atr', 'Atru.chr2.1577' => 'acertr', 'Atru.chr7.1313' => 'acertr', 'Atru.chr7.2316' => 'acertr', 'AUR62011015' => 'cqu', 'AUR62021526' => 'cqu', 'AUR62024828' => 'cqu', 'AUR62032387' => 'cqu', 'AUR62036504' => 'cqu', 'AUR62037071' => 'cqu', 'BcaB03g16092' => 'bca', 'BcaB07g34108' => 'bca', 'BcaC02g09433' => 'bca', 'BcaC05g24796' => 'bca', 'BcaC07g37377' => 'bca', 'BcaC09g52056' => 'bca', 'BcaNung06955' => 'bca', 'BolC1t00628H' => 'bol', 'BolC4t25833H' => 'bol', 'BolC5t29437H' => 'bol', 'BolC8t47683H' => 'bol', 'BraA01t00542Z' => 'bra', 'BraA04t16573Z' => 'bra', 'BraA06t23772Z' => 'bra', 'BraA08t32710Z' => 'bra', 'C01p06300' => 'bna', 'C04p42690' => 'bna', 'C05p06780' => 'bna', 'C08p08300' => 'bna', 'CAN.G679.10' => 'can', 'CAN.G713.33' => 'can', 'CAN.G749.3' => 'can', 'CAN.G959.43' => 'can', 'CANSAT54G0023' => 'cansat', 'CANSAT56G0530' => 'cansat', 'CANSAT56G1349' => 'cansat', 'CANSAT78G1522' => 'cansat', 'CARHR008610' => 'chi', 'CARHR218900' => 'chi', 'CARHR240600' => 'chi', 'Carub.0001s0804' => 'cru', 'Carub.0007s0791' => 'cru', 'Carub.0007s2923' => 'cru', 'Ca_04457_v3' => 'car', 'Ca_12905_v3' => 'car', 'Ca_25439_v3' => 'car', 'Ca_25517_v3' => 'car', 'CBR_g21816' => 'cbr', 'Cc00_g04900' => 'ccan', 'Cc06_g09450' => 'ccan', 'Cc08_g08250' => 'ccan', 'CDE02G1040' => 'cde', 'CDE04G0677' => 'cde', 'CDE06G2637' => 'cde', 'CDE07G1079' => 'cde', 'CDE08G1382' => 'cde', 'CDE09G0794' => 'cde', 'Cfa003281' => 'cfa', 'Cfa013220' => 'cfa', 'Ciclev10007554m.g' => 'ccl', 'Ciclev10010498m.g' => 'ccl', 'Ciclev10030836m.g' => 'ccl', 'CiPaw.03G234400' => 'cil', 'CiPaw.04G166600' => 'cil', 'CiPaw.07G217000' => 'cil', 'CiPaw.08G016300' => 'cil', 'CiPaw.10G124600' => 'cil', 'ClCG05G017250' => 'cla', 'ClCG10G016700' => 'cla', 'ClCG11G002590' => 'cla', 'COL.COLO4_24073' => 'col', 'COL.COLO4_30345' => 'col', 'COL.COLO4_34887' => 'col', 'COL.COLO4_38560' => 'col', 'Cpa.g.sc205.35' => 'cpa', 'Cpa.g.sc23.124' => 'cpa', 'Cpa.g.sc73.19' => 'cpa', 'Cpa.g.sc91.2' => 'cpa', 'Cre06.g302900' => 'cre', 'CsaV3_2G002390' => 'csa', 'CsaV3_3G039660' => 'csa', 'CsaV3_3G046730' => 'csa', 'CSS0011204' => 'camsi', 'CSS0012476' => 'camsi', 'CSS0017855' => 'camsi', 'CSS0032954' => 'camsi', 'CSS0033969' => 'camsi', 'CSS0034517' => 'camsi', 'CSS0038503' => 'camsi', 'CSS0043534' => 'camsi', 'CSS0046561' => 'camsi', 'CSS0049489' => 'camsi', 'DCAR_001495' => 'dca', 'DCAR_006260' => 'dca', 'DCAR_009088' => 'dca', 'DCAR_013499' => 'dca', 'DCAR_017829' => 'dca', 'DCAR_024706' => 'dca', 'DCAR_031958' => 'dca', 'Dinv30218' => 'din', 'Dinv30219' => 'din', 'Dinv30523' => 'din', 'Dinv35876' => 'din', 'Dinv36609' => 'din', 'Dinv37037' => 'din', 'Dinv41584' => 'din', 'Duzib106G0268' => 'dzi', 'Duzib128G0706' => 'dzi', 'Duzib150G0759' => 'dzi', 'Duzib168G2108' => 'dzi', 'Duzib187G0293' => 'dzi', 'ECA234G0831' => 'eca', 'ECA236G0736' => 'eca', 'ECA240G0084' => 'eca', 'EL10Ac2g02531' => 'bvu', 'EL10Ac8g18522' => 'bvu', 'EL10Ac8g19573' => 'bvu', 'EL10Ac9g21591' => 'bvu', 'Eucgr.A01700' => 'egr', 'Eucgr.C01068' => 'egr', 'Eucgr.K01548' => 'egr', 'FAN15G0311' => 'fan', 'FAN19G0712' => 'fan', 'FAN19G0786' => 'fan', 'FAN20G2175' => 'fan', 'FAN23G2212' => 'fan', 'FAN24G0293' => 'fan', 'FAN26G1169' => 'fan', 'FAN26G1470' => 'fan', 'FAN26G2075' => 'fan', 'FAN27G0132' => 'fan', 'FAN28G0104' => 'fan', 'FAN28G1375' => 'fan', 'FvH4_1g05240' => 'fve', 'FvH4_1g29630' => 'fve', 'FvH4_2g30220' => 'fve', 'Glyma.03G006000' => 'gma', 'Glyma.05G088000' => 'gma', 'Glyma.05G232200' => 'gma', 'Glyma.07G088500' => 'gma', 'Glyma.08G039600' => 'gma', 'Glyma.09G188300' => 'gma', 'Glyma.14G129900' => 'gma', 'Glyma.17G203600' => 'gma', 'Glyma.19G067400' => 'gma', 'Glyma.19G120051' => 'gma', 'Gohir.A05G011100' => 'ghi', 'Gohir.A05G021800' => 'ghi', 'Gohir.A06G048300' => 'ghi', 'Gohir.A06G060900' => 'ghi', 'Gohir.A08G240700' => 'ghi', 'Gohir.A09G083901' => 'ghi', 'Gohir.A11G224206' => 'ghi', 'Gohir.A11G300500' => 'ghi', 'Gohir.D05G011800' => 'ghi', 'Gohir.D05G023400' => 'ghi', 'Gohir.D06G048300' => 'ghi', 'Gohir.D06G059300' => 'ghi', 'Gohir.D08G261400' => 'ghi', 'Gohir.D09G083700' => 'ghi', 'Gohir.D11G237800' => 'ghi', 'Gohir.D11G315300' => 'ghi', 'Gorai.004G279500' => 'gra', 'Gorai.006G099600' => 'gra', 'Gorai.006G099700' => 'gra', 'Gorai.007G251300' => 'gra', 'Gorai.007G346500' => 'gra', 'Gorai.009G012100' => 'gra', 'Gorai.009G023500' => 'gra', 'Gorai.010G054100' => 'gra', 'Gorai.010G069100' => 'gra', 'GSVIVG01015419001' => 'vvi', 'GSVIVG01017129001' => 'vvi', 'GSVIVG01029915001' => 'vvi', 'GSVIVG01035737001' => 'vvi', 'HanXRQChr03g0061951' => 'han', 'HanXRQChr04g0125501' => 'han', 'HanXRQChr06g0178091' => 'han', 'HanXRQChr09g0239781' => 'han', 'HanXRQChr09g0239801' => 'han', 'HanXRQChr10g0317821' => 'han', 'Haze_20375' => 'cav', 'Haze_21635' => 'cav', 'Haze_25691' => 'cav', 'Hma1.2p1_0018F.1_g013230' => 'hma', 'Hma1.2p1_0165F.1_g073400' => 'hma', 'Hma1.2p1_0175F.1_g077322' => 'hma', 'Hma1.2p1_0175F.1_g077324' => 'hma', 'Hma1.2p1_1215F.1_g267620' => 'hma', 'HPP92_002910' => 'vpl', 'HPP92_002911' => 'vpl', 'HPP92_005546' => 'vpl', 'Hund09192' => 'sun', 'Hund25655' => 'sun', 'Hund26136' => 'sun', 'Lalb_Chr02g0157591' => 'lal', 'Lalb_Chr05g0222691' => 'lal', 'Lalb_Chr06g0174161' => 'lal', 'Lalb_Chr08g0243741' => 'lal', 'Lalb_Chr08g0243751' => 'lal', 'Lalb_Chr09g0331141' => 'lal', 'Lalb_Chr14g0371371' => 'lal', 'Lalb_Chr22g0352941' => 'lal', 'Lj2A416G33' => 'lonja', 'Lj2g0022086' => 'lja', 'Lj2g0023387' => 'lja', 'Lj4g0011940' => 'lja', 'Lj5g0013721' => 'lja', 'Lj7A646G40' => 'lonja', 'Lj7A646G41' => 'lonja', 'Lj7A711G47' => 'lonja', 'Lj7A711T50' => 'lonja', 'Lj8A609T42' => 'lonja', 'Lsat_1_v5_gn_1_125940' => 'lsa', 'Lsat_1_v5_gn_3_80100' => 'lsa', 'Lsat_1_v5_gn_5_1000' => 'lsa', 'Lsat_1_v5_gn_7_42361' => 'lsa', 'Lsat_1_v5_gn_8_83661' => 'lsa', 'Manes.03G067000' => 'mes', 'Manes.08G150600' => 'mes', 'Manes.09G135500' => 'mes', 'Manes.16G068700' => 'mes', 'Manes.16G070500' => 'mes', 'Mapoly0032s0108' => 'mpo', 'MBI01_g16636_MAGBIO' => 'mbi', 'MBI02_g07510_MAGBIO' => 'mbi', 'MBI04_g40088_MAGBIO' => 'mbi', 'MBI19_g30306_MAGBIO' => 'mbi', 'MBI19_g32310_MAGBIO' => 'mbi', 'MBI19_g40248_MAGBIO' => 'mbi', 'MCO11G774' => 'mco', 'MD02G1063100' => 'mdo', 'MD08G1135500' => 'mdo', 'MD12G1014100' => 'mdo', 'MD14G1011500' => 'mdo', 'MD15G1114500' => 'mdo', 'MD15G1188600' => 'mdo', 'Medtr1g010280' => 'mtr', 'Medtr4g025560' => 'mtr', 'Medtr6g027300' => 'mtr', 'Medtr6g086630' => 'mtr', 'Medtr8g103750' => 'mtr', 'MELO3C003662.2' => 'cme', 'MELO3C004547.2' => 'cme', 'MELO3C009707.2' => 'cme', 'Migut.A00267' => 'egut', 'Migut.J01581' => 'egut', 'Migut.K00184' => 'egut', 'Migut.K00462' => 'egut', 'Migut.L00406' => 'egut', 'MSTRG.10681' => 'ama', 'MSTRG.19757' => 'ama', 'MSTRG.6272' => 'ama', 'Nitab4.5_0000123g0070' => 'nta', 'Nitab4.5_0000125g0400' => 'nta', 'Nitab4.5_0001672g0150' => 'nta', 'Nitab4.5_0005047g0020' => 'nta', 'Nitab4.5_0007999g0030' => 'nta', 'Nitab4.5_0009945g0030' => 'nta', 'Nn2g11804' => 'nnu', 'Nn2g14730' => 'nnu', 'Nn8g39251' => 'nnu', 'Oeu018265.1' => 'oeu', 'Oeu023032.1' => 'oeu', 'Oeu027163.1' => 'oeu', 'Oeu027164.1' => 'oeu', 'Oeu044219.1' => 'oeu', 'Oeu045172.1' => 'oeu', 'Oeu048662.2' => 'oeu', 'Os01g0813900' => 'osa', 'Os02g0208900' => 'osa', 'Os03g0323500' => 'osa', 'Os05g0534800' => 'osa', 'Peaxi162Scf00003g05391' => 'pax', 'Peaxi162Scf00105g01225' => 'pax', 'Peaxi162Scf00546g00325' => 'pax', 'Peaxi162Scf00560g00513' => 'pax', 'PGR044G0999' => 'pgr', 'PGR142G2142' => 'pgr', 'PGR142G2361' => 'pgr', 'PGSC0003DMG400000322' => 'stu', 'PGSC0003DMG400007207' => 'stu', 'PGSC0003DMG400014483' => 'stu', 'Phvul.001G056000' => 'pvu', 'Phvul.002G314400' => 'pvu', 'Phvul.002G314500' => 'pvu', 'Phvul.004G052500' => 'pvu', 'Potri.006G246100' => 'ptr', 'Potri.013G068300' => 'ptr', 'Potri.018G035000' => 'ptr', 'Potri.018G076200' => 'ptr', 'Pp3c10_10670' => 'ppa', 'Pp3c14_22720' => 'ppa', 'Pp3c1_39920' => 'ppa', 'Pp3c1_70' => 'ppa', 'Pp3c2_28440' => 'ppa', 'PRCOL_00005201' => 'pco', 'Prupe.1G466000' => 'ppe', 'Prupe.7G026600' => 'ppe', 'Prupe.7G227900' => 'ppe', 'Psat1g039840' => 'psa', 'Psat1g088560' => 'psa', 'Psat6g031160' => 'psa', 'Psat7g014040' => 'psa', 'PSO063G5179' => 'pso', 'PSO210G5730' => 'pso', 'PSO210G6127' => 'pso', 'PSO541G0531' => 'pso', 'PSO675G2600' => 'pso', 'PSO782G3465' => 'pso', 'QL02p085888' => 'qlo', 'QL07p016355' => 'qlo', 'QL07p016401' => 'qlo', 'QL12p031169' => 'qlo', 'RcHm_v2.0_Chr2g0090971' => 'rch', 'RcHm_v2.0_Chr3g0495661' => 'rch', 'RcHm_v2.0_Chr6g0312661' => 'rch', 'Rhsim02G0186900' => 'rsi', 'Rhsim03G0045400' => 'rsi', 'Rhsim03G0244400' => 'rsi', 'Sabra06G0192600' => 'sbr', 'Sabra13G0059600' => 'sbr', 'Sabra18G0035800' => 'sbr', 'Sabra18G0064900' => 'sbr', 'SalBow1G0918' => 'sbo', 'SalBow1G5635' => 'sbo', 'SalBow1G7355' => 'sbo', 'SalBow2G0895' => 'sbo', 'SalBow4G3273' => 'sbo', 'SalBow6G5163' => 'sbo', 'Sc08g0007330' => 'sci', 'Sc18g0001100' => 'sci', 'Sc23g0005800' => 'sci', 'Sc23g0005810' => 'sci', 'Sed0000587' => 'sed', 'Sed0000855' => 'sed', 'Sed0021010' => 'sed', 'Sed0023292' => 'sed', 'SEGI_01593' => 'sgi', 'SEGI_02777' => 'sgi', 'SEGI_32372' => 'sgi', 'SGA_v2.0_scaffold106G30577' => 'sas', 'SGA_v2.0_scaffold109G31040' => 'sas', 'SGA_v2.0_scaffold240G44154' => 'sas', 'SGA_v2.0_scaffold27G11504' => 'sas', 'SHI02629' => 'shi', 'SHI14842' => 'shi', 'SMO351G0452' => 'smo', 'Solyc08g067930.4' => 'sly', 'Solyc10g076990.3' => 'sly', 'Solyc12g006990.2' => 'sly', 'Sopen08g021840' => 'spe', 'Sopen10g028670' => 'spe', 'Sopen12g002950' => 'spe', 'Sp1g07340' => 'spa', 'Sp7g10920' => 'spa', 'Sp7g30400' => 'spa', 'TAR383G0599' => 'tar', 'TAR586G0001' => 'tar', 'TAR586G0002' => 'tar', 'TAR624G0085' => 'tar', 'TAR636G1076' => 'tar', 'TAR636G2605' => 'tar', 'THA.LOC104804514' => 'tha', 'THA.LOC104808754' => 'tha', 'THA.LOC104821335' => 'tha', 'THA.LOC104823770' => 'tha', 'Thecc.05G237700' => 'tca', 'Thecc.06G084200' => 'tca', 'Thecc.09G113500' => 'tca', 'Thecc.09G143600' => 'tca', 'Thhalv10007026m.g' => 'esa', 'Thhalv10024655m.g' => 'esa', 'Thhalv10024713m.g' => 'esa', 'TPR.G21675' => 'tpr', 'TPR.G33939' => 'tpr', 'TPR.G38992' => 'tpr', 'TWI32G0814' => 'twi', 'TWI32G1313' => 'twi', 'TWI34G1393' => 'twi', 'TWI34G1746' => 'twi', 'TWI60G0413' => 'twi', 'TWI63G1217' => 'twi', 'unitig_0.g2729' => 'ugi', 'unitig_37.g12222' => 'ugi', 'vmacro06202' => 'vma', 'vmacro07632' => 'vma', 'vmacro11110' => 'vma', 'vmacro20662' => 'vma', 'VMungo0251G3166' => 'vmu', 'VMungo0251G3488' => 'vmu', 'VMungo0331G1876' => 'vmu', 'VMungo0464G1186' => 'vmu', 'VMungo0647G2223' => 'vmu', 'Zm00001eb015390' => 'zma', 'Zm00001eb087140' => 'zma', 'Zm00001eb091340' => 'zma', 'Zm00001eb114590' => 'zma', 'Zm00001eb149950' => 'zma', 'Zm00001eb205450' => 'zma', 'Zm00001eb240400' => 'zma', 'Zm00001eb293940' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001437', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001437' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001437', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001437' ) ), 'genes' => array( 'A01p05720' => 'bna', 'A04p08800' => 'bna', 'A06p05630' => 'bna', 'A08p07010' => 'bna', 'Aa31LG8G11170' => 'aar', 'Aa31LG9G4400' => 'aar', 'Aa31sc20G220' => 'aar', 'Aa31sc91G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.364' => 'aag', 'Actinidia07417' => 'ach', 'Actinidia09409' => 'ach', 'Actinidia13292' => 'ach', 'Actinidia13858' => 'ach', 'Actinidia20344' => 'ach', 'Actinidia32689' => 'ach', 'Actinidia37838' => 'ach', 'Ah.12g062060' => 'amhyb', 'Ah.12g063080' => 'amhyb', 'Ah.14g081670' => 'amhyb', 'Ah.14g081680' => 'amhyb', 'AL1G19130' => 'aly', 'AL7G19130' => 'aly', 'AL9U10310' => 'aly', 'Aqoxy2G00065' => 'aox', 'Aqoxy7G01811' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15P38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61QI09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73LV1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7CLK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5LKUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV0YIE' => 'arhy', 'AT1G08680' => 'ath', 'AT4G13350' => 'ath', 'AT4G32630' => 'ath', 'ATR0037G054' => 'atr', 'ATR0068G023' => 'atr', 'Atru.chr2.1577' => 'acertr', 'Atru.chr7.1313' => 'acertr', 'Atru.chr7.2316' => 'acertr', 'AUR62011015' => 'cqu', 'AUR62021526' => 'cqu', 'AUR62024828' => 'cqu', 'AUR62032387' => 'cqu', 'AUR62036504' => 'cqu', 'AUR62037071' => 'cqu', 'BcaB03g16092' => 'bca', 'BcaB07g34108' => 'bca', 'BcaC02g09433' => 'bca', 'BcaC05g24796' => 'bca', 'BcaC07g37377' => 'bca', 'BcaC09g52056' => 'bca', 'BcaNung06955' => 'bca', 'BolC1t00628H' => 'bol', 'BolC4t25833H' => 'bol', 'BolC5t29437H' => 'bol', 'BolC8t47683H' => 'bol', 'BraA01t00542Z' => 'bra', 'BraA04t16573Z' => 'bra', 'BraA06t23772Z' => 'bra', 'BraA08t32710Z' => 'bra', 'C01p06300' => 'bna', 'C04p42690' => 'bna', 'C05p06780' => 'bna', 'C08p08300' => 'bna', 'CAN.G679.10' => 'can', 'CAN.G713.33' => 'can', 'CAN.G749.3' => 'can', 'CAN.G959.43' => 'can', 'CANSAT54G0023' => 'cansat', 'CANSAT56G0530' => 'cansat', 'CANSAT56G1349' => 'cansat', 'CANSAT78G1522' => 'cansat', 'CARHR008610' => 'chi', 'CARHR218900' => 'chi', 'CARHR240600' => 'chi', 'Carub.0001s0804' => 'cru', 'Carub.0007s0791' => 'cru', 'Carub.0007s2923' => 'cru', 'Ca_04457_v3' => 'car', 'Ca_12905_v3' => 'car', 'Ca_25439_v3' => 'car', 'Ca_25517_v3' => 'car', 'CBR_g21816' => 'cbr', 'Cc00_g04900' => 'ccan', 'Cc06_g09450' => 'ccan', 'Cc08_g08250' => 'ccan', 'CDE02G1040' => 'cde', 'CDE04G0677' => 'cde', 'CDE06G2637' => 'cde', 'CDE07G1079' => 'cde', 'CDE08G1382' => 'cde', 'CDE09G0794' => 'cde', 'Cfa003281' => 'cfa', 'Cfa013220' => 'cfa', 'Ciclev10007554m.g' => 'ccl', 'Ciclev10010498m.g' => 'ccl', 'Ciclev10030836m.g' => 'ccl', 'CiPaw.03G234400' => 'cil', 'CiPaw.04G166600' => 'cil', 'CiPaw.07G217000' => 'cil', 'CiPaw.08G016300' => 'cil', 'CiPaw.10G124600' => 'cil', 'ClCG05G017250' => 'cla', 'ClCG10G016700' => 'cla', 'ClCG11G002590' => 'cla', 'COL.COLO4_24073' => 'col', 'COL.COLO4_30345' => 'col', 'COL.COLO4_34887' => 'col', 'COL.COLO4_38560' => 'col', 'Cpa.g.sc205.35' => 'cpa', 'Cpa.g.sc23.124' => 'cpa', 'Cpa.g.sc73.19' => 'cpa', 'Cpa.g.sc91.2' => 'cpa', 'Cre06.g302900' => 'cre', 'CsaV3_2G002390' => 'csa', 'CsaV3_3G039660' => 'csa', 'CsaV3_3G046730' => 'csa', 'CSS0011204' => 'camsi', 'CSS0012476' => 'camsi', 'CSS0017855' => 'camsi', 'CSS0032954' => 'camsi', 'CSS0033969' => 'camsi', 'CSS0034517' => 'camsi', 'CSS0038503' => 'camsi', 'CSS0043534' => 'camsi', 'CSS0046561' => 'camsi', 'CSS0049489' => 'camsi', 'DCAR_001495' => 'dca', 'DCAR_006260' => 'dca', 'DCAR_009088' => 'dca', 'DCAR_013499' => 'dca', 'DCAR_017829' => 'dca', 'DCAR_024706' => 'dca', 'DCAR_031958' => 'dca', 'Dinv30218' => 'din', 'Dinv30219' => 'din', 'Dinv30523' => 'din', 'Dinv35876' => 'din', 'Dinv36609' => 'din', 'Dinv37037' => 'din', 'Dinv41584' => 'din', 'Duzib106G0268' => 'dzi', 'Duzib128G0706' => 'dzi', 'Duzib150G0759' => 'dzi', 'Duzib168G2108' => 'dzi', 'Duzib187G0293' => 'dzi', 'ECA234G0831' => 'eca', 'ECA236G0736' => 'eca', 'ECA240G0084' => 'eca', 'EL10Ac2g02531' => 'bvu', 'EL10Ac8g18522' => 'bvu', 'EL10Ac8g19573' => 'bvu', 'EL10Ac9g21591' => 'bvu', 'Eucgr.A01700' => 'egr', 'Eucgr.C01068' => 'egr', 'Eucgr.K01548' => 'egr', 'FAN15G0311' => 'fan', 'FAN19G0712' => 'fan', 'FAN19G0786' => 'fan', 'FAN20G2175' => 'fan', 'FAN23G2212' => 'fan', 'FAN24G0293' => 'fan', 'FAN26G1169' => 'fan', 'FAN26G1470' => 'fan', 'FAN26G2075' => 'fan', 'FAN27G0132' => 'fan', 'FAN28G0104' => 'fan', 'FAN28G1375' => 'fan', 'FvH4_1g05240' => 'fve', 'FvH4_1g29630' => 'fve', 'FvH4_2g30220' => 'fve', 'Glyma.03G006000' => 'gma', 'Glyma.05G088000' => 'gma', 'Glyma.05G232200' => 'gma', 'Glyma.07G088500' => 'gma', 'Glyma.08G039600' => 'gma', 'Glyma.09G188300' => 'gma', 'Glyma.14G129900' => 'gma', 'Glyma.17G203600' => 'gma', 'Glyma.19G067400' => 'gma', 'Glyma.19G120051' => 'gma', 'Gohir.A05G011100' => 'ghi', 'Gohir.A05G021800' => 'ghi', 'Gohir.A06G048300' => 'ghi', 'Gohir.A06G060900' => 'ghi', 'Gohir.A08G240700' => 'ghi', 'Gohir.A09G083901' => 'ghi', 'Gohir.A11G224206' => 'ghi', 'Gohir.A11G300500' => 'ghi', 'Gohir.D05G011800' => 'ghi', 'Gohir.D05G023400' => 'ghi', 'Gohir.D06G048300' => 'ghi', 'Gohir.D06G059300' => 'ghi', 'Gohir.D08G261400' => 'ghi', 'Gohir.D09G083700' => 'ghi', 'Gohir.D11G237800' => 'ghi', 'Gohir.D11G315300' => 'ghi', 'Gorai.004G279500' => 'gra', 'Gorai.006G099600' => 'gra', 'Gorai.006G099700' => 'gra', 'Gorai.007G251300' => 'gra', 'Gorai.007G346500' => 'gra', 'Gorai.009G012100' => 'gra', 'Gorai.009G023500' => 'gra', 'Gorai.010G054100' => 'gra', 'Gorai.010G069100' => 'gra', 'GSVIVG01015419001' => 'vvi', 'GSVIVG01017129001' => 'vvi', 'GSVIVG01029915001' => 'vvi', 'GSVIVG01035737001' => 'vvi', 'HanXRQChr03g0061951' => 'han', 'HanXRQChr04g0125501' => 'han', 'HanXRQChr06g0178091' => 'han', 'HanXRQChr09g0239781' => 'han', 'HanXRQChr09g0239801' => 'han', 'HanXRQChr10g0317821' => 'han', 'Haze_20375' => 'cav', 'Haze_21635' => 'cav', 'Haze_25691' => 'cav', 'Hma1.2p1_0018F.1_g013230' => 'hma', 'Hma1.2p1_0165F.1_g073400' => 'hma', 'Hma1.2p1_0175F.1_g077322' => 'hma', 'Hma1.2p1_0175F.1_g077324' => 'hma', 'Hma1.2p1_1215F.1_g267620' => 'hma', 'HPP92_002910' => 'vpl', 'HPP92_002911' => 'vpl', 'HPP92_005546' => 'vpl', 'Hund09192' => 'sun', 'Hund25655' => 'sun', 'Hund26136' => 'sun', 'Lalb_Chr02g0157591' => 'lal', 'Lalb_Chr05g0222691' => 'lal', 'Lalb_Chr06g0174161' => 'lal', 'Lalb_Chr08g0243741' => 'lal', 'Lalb_Chr08g0243751' => 'lal', 'Lalb_Chr09g0331141' => 'lal', 'Lalb_Chr14g0371371' => 'lal', 'Lalb_Chr22g0352941' => 'lal', 'Lj2A416G33' => 'lonja', 'Lj2g0022086' => 'lja', 'Lj2g0023387' => 'lja', 'Lj4g0011940' => 'lja', 'Lj5g0013721' => 'lja', 'Lj7A646G40' => 'lonja', 'Lj7A646G41' => 'lonja', 'Lj7A711G47' => 'lonja', 'Lj7A711T50' => 'lonja', 'Lj8A609T42' => 'lonja', 'Lsat_1_v5_gn_1_125940' => 'lsa', 'Lsat_1_v5_gn_3_80100' => 'lsa', 'Lsat_1_v5_gn_5_1000' => 'lsa', 'Lsat_1_v5_gn_7_42361' => 'lsa', 'Lsat_1_v5_gn_8_83661' => 'lsa', 'Manes.03G067000' => 'mes', 'Manes.08G150600' => 'mes', 'Manes.09G135500' => 'mes', 'Manes.16G068700' => 'mes', 'Manes.16G070500' => 'mes', 'Mapoly0032s0108' => 'mpo', 'MBI01_g16636_MAGBIO' => 'mbi', 'MBI02_g07510_MAGBIO' => 'mbi', 'MBI04_g40088_MAGBIO' => 'mbi', 'MBI19_g30306_MAGBIO' => 'mbi', 'MBI19_g32310_MAGBIO' => 'mbi', 'MBI19_g40248_MAGBIO' => 'mbi', 'MCO11G774' => 'mco', 'MD02G1063100' => 'mdo', 'MD08G1135500' => 'mdo', 'MD12G1014100' => 'mdo', 'MD14G1011500' => 'mdo', 'MD15G1114500' => 'mdo', 'MD15G1188600' => 'mdo', 'Medtr1g010280' => 'mtr', 'Medtr4g025560' => 'mtr', 'Medtr6g027300' => 'mtr', 'Medtr6g086630' => 'mtr', 'Medtr8g103750' => 'mtr', 'MELO3C003662.2' => 'cme', 'MELO3C004547.2' => 'cme', 'MELO3C009707.2' => 'cme', 'Migut.A00267' => 'egut', 'Migut.J01581' => 'egut', 'Migut.K00184' => 'egut', 'Migut.K00462' => 'egut', 'Migut.L00406' => 'egut', 'MSTRG.10681' => 'ama', 'MSTRG.19757' => 'ama', 'MSTRG.6272' => 'ama', 'Nitab4.5_0000123g0070' => 'nta', 'Nitab4.5_0000125g0400' => 'nta', 'Nitab4.5_0001672g0150' => 'nta', 'Nitab4.5_0005047g0020' => 'nta', 'Nitab4.5_0007999g0030' => 'nta', 'Nitab4.5_0009945g0030' => 'nta', 'Nn2g11804' => 'nnu', 'Nn2g14730' => 'nnu', 'Nn8g39251' => 'nnu', 'Oeu018265.1' => 'oeu', 'Oeu023032.1' => 'oeu', 'Oeu027163.1' => 'oeu', 'Oeu027164.1' => 'oeu', 'Oeu044219.1' => 'oeu', 'Oeu045172.1' => 'oeu', 'Oeu048662.2' => 'oeu', 'Os01g0813900' => 'osa', 'Os02g0208900' => 'osa', 'Os03g0323500' => 'osa', 'Os05g0534800' => 'osa', 'Peaxi162Scf00003g05391' => 'pax', 'Peaxi162Scf00105g01225' => 'pax', 'Peaxi162Scf00546g00325' => 'pax', 'Peaxi162Scf00560g00513' => 'pax', 'PGR044G0999' => 'pgr', 'PGR142G2142' => 'pgr', 'PGR142G2361' => 'pgr', 'PGSC0003DMG400000322' => 'stu', 'PGSC0003DMG400007207' => 'stu', 'PGSC0003DMG400014483' => 'stu', 'Phvul.001G056000' => 'pvu', 'Phvul.002G314400' => 'pvu', 'Phvul.002G314500' => 'pvu', 'Phvul.004G052500' => 'pvu', 'Potri.006G246100' => 'ptr', 'Potri.013G068300' => 'ptr', 'Potri.018G035000' => 'ptr', 'Potri.018G076200' => 'ptr', 'Pp3c10_10670' => 'ppa', 'Pp3c14_22720' => 'ppa', 'Pp3c1_39920' => 'ppa', 'Pp3c1_70' => 'ppa', 'Pp3c2_28440' => 'ppa', 'PRCOL_00005201' => 'pco', 'Prupe.1G466000' => 'ppe', 'Prupe.7G026600' => 'ppe', 'Prupe.7G227900' => 'ppe', 'Psat1g039840' => 'psa', 'Psat1g088560' => 'psa', 'Psat6g031160' => 'psa', 'Psat7g014040' => 'psa', 'PSO063G5179' => 'pso', 'PSO210G5730' => 'pso', 'PSO210G6127' => 'pso', 'PSO541G0531' => 'pso', 'PSO675G2600' => 'pso', 'PSO782G3465' => 'pso', 'QL02p085888' => 'qlo', 'QL07p016355' => 'qlo', 'QL07p016401' => 'qlo', 'QL12p031169' => 'qlo', 'RcHm_v2.0_Chr2g0090971' => 'rch', 'RcHm_v2.0_Chr3g0495661' => 'rch', 'RcHm_v2.0_Chr6g0312661' => 'rch', 'Rhsim02G0186900' => 'rsi', 'Rhsim03G0045400' => 'rsi', 'Rhsim03G0244400' => 'rsi', 'Sabra06G0192600' => 'sbr', 'Sabra13G0059600' => 'sbr', 'Sabra18G0035800' => 'sbr', 'Sabra18G0064900' => 'sbr', 'SalBow1G0918' => 'sbo', 'SalBow1G5635' => 'sbo', 'SalBow1G7355' => 'sbo', 'SalBow2G0895' => 'sbo', 'SalBow4G3273' => 'sbo', 'SalBow6G5163' => 'sbo', 'Sc08g0007330' => 'sci', 'Sc18g0001100' => 'sci', 'Sc23g0005800' => 'sci', 'Sc23g0005810' => 'sci', 'Sed0000587' => 'sed', 'Sed0000855' => 'sed', 'Sed0021010' => 'sed', 'Sed0023292' => 'sed', 'SEGI_01593' => 'sgi', 'SEGI_02777' => 'sgi', 'SEGI_32372' => 'sgi', 'SGA_v2.0_scaffold106G30577' => 'sas', 'SGA_v2.0_scaffold109G31040' => 'sas', 'SGA_v2.0_scaffold240G44154' => 'sas', 'SGA_v2.0_scaffold27G11504' => 'sas', 'SHI02629' => 'shi', 'SHI14842' => 'shi', 'SMO351G0452' => 'smo', 'Solyc08g067930.4' => 'sly', 'Solyc10g076990.3' => 'sly', 'Solyc12g006990.2' => 'sly', 'Sopen08g021840' => 'spe', 'Sopen10g028670' => 'spe', 'Sopen12g002950' => 'spe', 'Sp1g07340' => 'spa', 'Sp7g10920' => 'spa', 'Sp7g30400' => 'spa', 'TAR383G0599' => 'tar', 'TAR586G0001' => 'tar', 'TAR586G0002' => 'tar', 'TAR624G0085' => 'tar', 'TAR636G1076' => 'tar', 'TAR636G2605' => 'tar', 'THA.LOC104804514' => 'tha', 'THA.LOC104808754' => 'tha', 'THA.LOC104821335' => 'tha', 'THA.LOC104823770' => 'tha', 'Thecc.05G237700' => 'tca', 'Thecc.06G084200' => 'tca', 'Thecc.09G113500' => 'tca', 'Thecc.09G143600' => 'tca', 'Thhalv10007026m.g' => 'esa', 'Thhalv10024655m.g' => 'esa', 'Thhalv10024713m.g' => 'esa', 'TPR.G21675' => 'tpr', 'TPR.G33939' => 'tpr', 'TPR.G38992' => 'tpr', 'TWI32G0814' => 'twi', 'TWI32G1313' => 'twi', 'TWI34G1393' => 'twi', 'TWI34G1746' => 'twi', 'TWI60G0413' => 'twi', 'TWI63G1217' => 'twi', 'unitig_0.g2729' => 'ugi', 'unitig_37.g12222' => 'ugi', 'vmacro06202' => 'vma', 'vmacro07632' => 'vma', 'vmacro11110' => 'vma', 'vmacro20662' => 'vma', 'VMungo0251G3166' => 'vmu', 'VMungo0251G3488' => 'vmu', 'VMungo0331G1876' => 'vmu', 'VMungo0464G1186' => 'vmu', 'VMungo0647G2223' => 'vmu', 'Zm00001eb015390' => 'zma', 'Zm00001eb087140' => 'zma', 'Zm00001eb091340' => 'zma', 'Zm00001eb114590' => 'zma', 'Zm00001eb149950' => 'zma', 'Zm00001eb205450' => 'zma', 'Zm00001eb240400' => 'zma', 'Zm00001eb293940' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001437' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001437' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001437' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001437' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001437', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p05720' => 'bna', 'A04p08800' => 'bna', 'A06p05630' => 'bna', 'A08p07010' => 'bna', 'Aa31LG8G11170' => 'aar', 'Aa31LG9G4400' => 'aar', 'Aa31sc20G220' => 'aar', 'Aa31sc91G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.364' => 'aag', 'Actinidia07417' => 'ach', 'Actinidia09409' => 'ach', 'Actinidia13292' => 'ach', 'Actinidia13858' => 'ach', 'Actinidia20344' => 'ach', 'Actinidia32689' => 'ach', 'Actinidia37838' => 'ach', 'Ah.12g062060' => 'amhyb', 'Ah.12g063080' => 'amhyb', 'Ah.14g081670' => 'amhyb', 'Ah.14g081680' => 'amhyb', 'AL1G19130' => 'aly', 'AL7G19130' => 'aly', 'AL9U10310' => 'aly', 'Aqoxy2G00065' => 'aox', 'Aqoxy7G01811' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15P38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61QI09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73LV1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7CLK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5LKUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV0YIE' => 'arhy', 'AT1G08680' => 'ath', 'AT4G13350' => 'ath', 'AT4G32630' => 'ath', 'ATR0037G054' => 'atr', 'ATR0068G023' => 'atr', 'Atru.chr2.1577' => 'acertr', 'Atru.chr7.1313' => 'acertr', 'Atru.chr7.2316' => 'acertr', 'AUR62011015' => 'cqu', 'AUR62021526' => 'cqu', 'AUR62024828' => 'cqu', 'AUR62032387' => 'cqu', 'AUR62036504' => 'cqu', 'AUR62037071' => 'cqu', 'BcaB03g16092' => 'bca', 'BcaB07g34108' => 'bca', 'BcaC02g09433' => 'bca', 'BcaC05g24796' => 'bca', 'BcaC07g37377' => 'bca', 'BcaC09g52056' => 'bca', 'BcaNung06955' => 'bca', 'BolC1t00628H' => 'bol', 'BolC4t25833H' => 'bol', 'BolC5t29437H' => 'bol', 'BolC8t47683H' => 'bol', 'BraA01t00542Z' => 'bra', 'BraA04t16573Z' => 'bra', 'BraA06t23772Z' => 'bra', 'BraA08t32710Z' => 'bra', 'C01p06300' => 'bna', 'C04p42690' => 'bna', 'C05p06780' => 'bna', 'C08p08300' => 'bna', 'CAN.G679.10' => 'can', 'CAN.G713.33' => 'can', 'CAN.G749.3' => 'can', 'CAN.G959.43' => 'can', 'CANSAT54G0023' => 'cansat', 'CANSAT56G0530' => 'cansat', 'CANSAT56G1349' => 'cansat', 'CANSAT78G1522' => 'cansat', 'CARHR008610' => 'chi', 'CARHR218900' => 'chi', 'CARHR240600' => 'chi', 'Carub.0001s0804' => 'cru', 'Carub.0007s0791' => 'cru', 'Carub.0007s2923' => 'cru', 'Ca_04457_v3' => 'car', 'Ca_12905_v3' => 'car', 'Ca_25439_v3' => 'car', 'Ca_25517_v3' => 'car', 'CBR_g21816' => 'cbr', 'Cc00_g04900' => 'ccan', 'Cc06_g09450' => 'ccan', 'Cc08_g08250' => 'ccan', 'CDE02G1040' => 'cde', 'CDE04G0677' => 'cde', 'CDE06G2637' => 'cde', 'CDE07G1079' => 'cde', 'CDE08G1382' => 'cde', 'CDE09G0794' => 'cde', 'Cfa003281' => 'cfa', 'Cfa013220' => 'cfa', 'Ciclev10007554m.g' => 'ccl', 'Ciclev10010498m.g' => 'ccl', 'Ciclev10030836m.g' => 'ccl', 'CiPaw.03G234400' => 'cil', 'CiPaw.04G166600' => 'cil', 'CiPaw.07G217000' => 'cil', 'CiPaw.08G016300' => 'cil', 'CiPaw.10G124600' => 'cil', 'ClCG05G017250' => 'cla', 'ClCG10G016700' => 'cla', 'ClCG11G002590' => 'cla', 'COL.COLO4_24073' => 'col', 'COL.COLO4_30345' => 'col', 'COL.COLO4_34887' => 'col', 'COL.COLO4_38560' => 'col', 'Cpa.g.sc205.35' => 'cpa', 'Cpa.g.sc23.124' => 'cpa', 'Cpa.g.sc73.19' => 'cpa', 'Cpa.g.sc91.2' => 'cpa', 'Cre06.g302900' => 'cre', 'CsaV3_2G002390' => 'csa', 'CsaV3_3G039660' => 'csa', 'CsaV3_3G046730' => 'csa', 'CSS0011204' => 'camsi', 'CSS0012476' => 'camsi', 'CSS0017855' => 'camsi', 'CSS0032954' => 'camsi', 'CSS0033969' => 'camsi', 'CSS0034517' => 'camsi', 'CSS0038503' => 'camsi', 'CSS0043534' => 'camsi', 'CSS0046561' => 'camsi', 'CSS0049489' => 'camsi', 'DCAR_001495' => 'dca', 'DCAR_006260' => 'dca', 'DCAR_009088' => 'dca', 'DCAR_013499' => 'dca', 'DCAR_017829' => 'dca', 'DCAR_024706' => 'dca', 'DCAR_031958' => 'dca', 'Dinv30218' => 'din', 'Dinv30219' => 'din', 'Dinv30523' => 'din', 'Dinv35876' => 'din', 'Dinv36609' => 'din', 'Dinv37037' => 'din', 'Dinv41584' => 'din', 'Duzib106G0268' => 'dzi', 'Duzib128G0706' => 'dzi', 'Duzib150G0759' => 'dzi', 'Duzib168G2108' => 'dzi', 'Duzib187G0293' => 'dzi', 'ECA234G0831' => 'eca', 'ECA236G0736' => 'eca', 'ECA240G0084' => 'eca', 'EL10Ac2g02531' => 'bvu', 'EL10Ac8g18522' => 'bvu', 'EL10Ac8g19573' => 'bvu', 'EL10Ac9g21591' => 'bvu', 'Eucgr.A01700' => 'egr', 'Eucgr.C01068' => 'egr', 'Eucgr.K01548' => 'egr', 'FAN15G0311' => 'fan', 'FAN19G0712' => 'fan', 'FAN19G0786' => 'fan', 'FAN20G2175' => 'fan', 'FAN23G2212' => 'fan', 'FAN24G0293' => 'fan', 'FAN26G1169' => 'fan', 'FAN26G1470' => 'fan', 'FAN26G2075' => 'fan', 'FAN27G0132' => 'fan', 'FAN28G0104' => 'fan', 'FAN28G1375' => 'fan', 'FvH4_1g05240' => 'fve', 'FvH4_1g29630' => 'fve', 'FvH4_2g30220' => 'fve', 'Glyma.03G006000' => 'gma', 'Glyma.05G088000' => 'gma', 'Glyma.05G232200' => 'gma', 'Glyma.07G088500' => 'gma', 'Glyma.08G039600' => 'gma', 'Glyma.09G188300' => 'gma', 'Glyma.14G129900' => 'gma', 'Glyma.17G203600' => 'gma', 'Glyma.19G067400' => 'gma', 'Glyma.19G120051' => 'gma', 'Gohir.A05G011100' => 'ghi', 'Gohir.A05G021800' => 'ghi', 'Gohir.A06G048300' => 'ghi', 'Gohir.A06G060900' => 'ghi', 'Gohir.A08G240700' => 'ghi', 'Gohir.A09G083901' => 'ghi', 'Gohir.A11G224206' => 'ghi', 'Gohir.A11G300500' => 'ghi', 'Gohir.D05G011800' => 'ghi', 'Gohir.D05G023400' => 'ghi', 'Gohir.D06G048300' => 'ghi', 'Gohir.D06G059300' => 'ghi', 'Gohir.D08G261400' => 'ghi', 'Gohir.D09G083700' => 'ghi', 'Gohir.D11G237800' => 'ghi', 'Gohir.D11G315300' => 'ghi', 'Gorai.004G279500' => 'gra', 'Gorai.006G099600' => 'gra', 'Gorai.006G099700' => 'gra', 'Gorai.007G251300' => 'gra', 'Gorai.007G346500' => 'gra', 'Gorai.009G012100' => 'gra', 'Gorai.009G023500' => 'gra', 'Gorai.010G054100' => 'gra', 'Gorai.010G069100' => 'gra', 'GSVIVG01015419001' => 'vvi', 'GSVIVG01017129001' => 'vvi', 'GSVIVG01029915001' => 'vvi', 'GSVIVG01035737001' => 'vvi', 'HanXRQChr03g0061951' => 'han', 'HanXRQChr04g0125501' => 'han', 'HanXRQChr06g0178091' => 'han', 'HanXRQChr09g0239781' => 'han', 'HanXRQChr09g0239801' => 'han', 'HanXRQChr10g0317821' => 'han', 'Haze_20375' => 'cav', 'Haze_21635' => 'cav', 'Haze_25691' => 'cav', 'Hma1.2p1_0018F.1_g013230' => 'hma', 'Hma1.2p1_0165F.1_g073400' => 'hma', 'Hma1.2p1_0175F.1_g077322' => 'hma', 'Hma1.2p1_0175F.1_g077324' => 'hma', 'Hma1.2p1_1215F.1_g267620' => 'hma', 'HPP92_002910' => 'vpl', 'HPP92_002911' => 'vpl', 'HPP92_005546' => 'vpl', 'Hund09192' => 'sun', 'Hund25655' => 'sun', 'Hund26136' => 'sun', 'Lalb_Chr02g0157591' => 'lal', 'Lalb_Chr05g0222691' => 'lal', 'Lalb_Chr06g0174161' => 'lal', 'Lalb_Chr08g0243741' => 'lal', 'Lalb_Chr08g0243751' => 'lal', 'Lalb_Chr09g0331141' => 'lal', 'Lalb_Chr14g0371371' => 'lal', 'Lalb_Chr22g0352941' => 'lal', 'Lj2A416G33' => 'lonja', 'Lj2g0022086' => 'lja', 'Lj2g0023387' => 'lja', 'Lj4g0011940' => 'lja', 'Lj5g0013721' => 'lja', 'Lj7A646G40' => 'lonja', 'Lj7A646G41' => 'lonja', 'Lj7A711G47' => 'lonja', 'Lj7A711T50' => 'lonja', 'Lj8A609T42' => 'lonja', 'Lsat_1_v5_gn_1_125940' => 'lsa', 'Lsat_1_v5_gn_3_80100' => 'lsa', 'Lsat_1_v5_gn_5_1000' => 'lsa', 'Lsat_1_v5_gn_7_42361' => 'lsa', 'Lsat_1_v5_gn_8_83661' => 'lsa', 'Manes.03G067000' => 'mes', 'Manes.08G150600' => 'mes', 'Manes.09G135500' => 'mes', 'Manes.16G068700' => 'mes', 'Manes.16G070500' => 'mes', 'Mapoly0032s0108' => 'mpo', 'MBI01_g16636_MAGBIO' => 'mbi', 'MBI02_g07510_MAGBIO' => 'mbi', 'MBI04_g40088_MAGBIO' => 'mbi', 'MBI19_g30306_MAGBIO' => 'mbi', 'MBI19_g32310_MAGBIO' => 'mbi', 'MBI19_g40248_MAGBIO' => 'mbi', 'MCO11G774' => 'mco', 'MD02G1063100' => 'mdo', 'MD08G1135500' => 'mdo', 'MD12G1014100' => 'mdo', 'MD14G1011500' => 'mdo', 'MD15G1114500' => 'mdo', 'MD15G1188600' => 'mdo', 'Medtr1g010280' => 'mtr', 'Medtr4g025560' => 'mtr', 'Medtr6g027300' => 'mtr', 'Medtr6g086630' => 'mtr', 'Medtr8g103750' => 'mtr', 'MELO3C003662.2' => 'cme', 'MELO3C004547.2' => 'cme', 'MELO3C009707.2' => 'cme', 'Migut.A00267' => 'egut', 'Migut.J01581' => 'egut', 'Migut.K00184' => 'egut', 'Migut.K00462' => 'egut', 'Migut.L00406' => 'egut', 'MSTRG.10681' => 'ama', 'MSTRG.19757' => 'ama', 'MSTRG.6272' => 'ama', 'Nitab4.5_0000123g0070' => 'nta', 'Nitab4.5_0000125g0400' => 'nta', 'Nitab4.5_0001672g0150' => 'nta', 'Nitab4.5_0005047g0020' => 'nta', 'Nitab4.5_0007999g0030' => 'nta', 'Nitab4.5_0009945g0030' => 'nta', 'Nn2g11804' => 'nnu', 'Nn2g14730' => 'nnu', 'Nn8g39251' => 'nnu', 'Oeu018265.1' => 'oeu', 'Oeu023032.1' => 'oeu', 'Oeu027163.1' => 'oeu', 'Oeu027164.1' => 'oeu', 'Oeu044219.1' => 'oeu', 'Oeu045172.1' => 'oeu', 'Oeu048662.2' => 'oeu', 'Os01g0813900' => 'osa', 'Os02g0208900' => 'osa', 'Os03g0323500' => 'osa', 'Os05g0534800' => 'osa', 'Peaxi162Scf00003g05391' => 'pax', 'Peaxi162Scf00105g01225' => 'pax', 'Peaxi162Scf00546g00325' => 'pax', 'Peaxi162Scf00560g00513' => 'pax', 'PGR044G0999' => 'pgr', 'PGR142G2142' => 'pgr', 'PGR142G2361' => 'pgr', 'PGSC0003DMG400000322' => 'stu', 'PGSC0003DMG400007207' => 'stu', 'PGSC0003DMG400014483' => 'stu', 'Phvul.001G056000' => 'pvu', 'Phvul.002G314400' => 'pvu', 'Phvul.002G314500' => 'pvu', 'Phvul.004G052500' => 'pvu', 'Potri.006G246100' => 'ptr', 'Potri.013G068300' => 'ptr', 'Potri.018G035000' => 'ptr', 'Potri.018G076200' => 'ptr', 'Pp3c10_10670' => 'ppa', 'Pp3c14_22720' => 'ppa', 'Pp3c1_39920' => 'ppa', 'Pp3c1_70' => 'ppa', 'Pp3c2_28440' => 'ppa', 'PRCOL_00005201' => 'pco', 'Prupe.1G466000' => 'ppe', 'Prupe.7G026600' => 'ppe', 'Prupe.7G227900' => 'ppe', 'Psat1g039840' => 'psa', 'Psat1g088560' => 'psa', 'Psat6g031160' => 'psa', 'Psat7g014040' => 'psa', 'PSO063G5179' => 'pso', 'PSO210G5730' => 'pso', 'PSO210G6127' => 'pso', 'PSO541G0531' => 'pso', 'PSO675G2600' => 'pso', 'PSO782G3465' => 'pso', 'QL02p085888' => 'qlo', 'QL07p016355' => 'qlo', 'QL07p016401' => 'qlo', 'QL12p031169' => 'qlo', 'RcHm_v2.0_Chr2g0090971' => 'rch', 'RcHm_v2.0_Chr3g0495661' => 'rch', 'RcHm_v2.0_Chr6g0312661' => 'rch', 'Rhsim02G0186900' => 'rsi', 'Rhsim03G0045400' => 'rsi', 'Rhsim03G0244400' => 'rsi', 'Sabra06G0192600' => 'sbr', 'Sabra13G0059600' => 'sbr', 'Sabra18G0035800' => 'sbr', 'Sabra18G0064900' => 'sbr', 'SalBow1G0918' => 'sbo', 'SalBow1G5635' => 'sbo', 'SalBow1G7355' => 'sbo', 'SalBow2G0895' => 'sbo', 'SalBow4G3273' => 'sbo', 'SalBow6G5163' => 'sbo', 'Sc08g0007330' => 'sci', 'Sc18g0001100' => 'sci', 'Sc23g0005800' => 'sci', 'Sc23g0005810' => 'sci', 'Sed0000587' => 'sed', 'Sed0000855' => 'sed', 'Sed0021010' => 'sed', 'Sed0023292' => 'sed', 'SEGI_01593' => 'sgi', 'SEGI_02777' => 'sgi', 'SEGI_32372' => 'sgi', 'SGA_v2.0_scaffold106G30577' => 'sas', 'SGA_v2.0_scaffold109G31040' => 'sas', 'SGA_v2.0_scaffold240G44154' => 'sas', 'SGA_v2.0_scaffold27G11504' => 'sas', 'SHI02629' => 'shi', 'SHI14842' => 'shi', 'SMO351G0452' => 'smo', 'Solyc08g067930.4' => 'sly', 'Solyc10g076990.3' => 'sly', 'Solyc12g006990.2' => 'sly', 'Sopen08g021840' => 'spe', 'Sopen10g028670' => 'spe', 'Sopen12g002950' => 'spe', 'Sp1g07340' => 'spa', 'Sp7g10920' => 'spa', 'Sp7g30400' => 'spa', 'TAR383G0599' => 'tar', 'TAR586G0001' => 'tar', 'TAR586G0002' => 'tar', 'TAR624G0085' => 'tar', 'TAR636G1076' => 'tar', 'TAR636G2605' => 'tar', 'THA.LOC104804514' => 'tha', 'THA.LOC104808754' => 'tha', 'THA.LOC104821335' => 'tha', 'THA.LOC104823770' => 'tha', 'Thecc.05G237700' => 'tca', 'Thecc.06G084200' => 'tca', 'Thecc.09G113500' => 'tca', 'Thecc.09G143600' => 'tca', 'Thhalv10007026m.g' => 'esa', 'Thhalv10024655m.g' => 'esa', 'Thhalv10024713m.g' => 'esa', 'TPR.G21675' => 'tpr', 'TPR.G33939' => 'tpr', 'TPR.G38992' => 'tpr', 'TWI32G0814' => 'twi', 'TWI32G1313' => 'twi', 'TWI34G1393' => 'twi', 'TWI34G1746' => 'twi', 'TWI60G0413' => 'twi', 'TWI63G1217' => 'twi', 'unitig_0.g2729' => 'ugi', 'unitig_37.g12222' => 'ugi', 'vmacro06202' => 'vma', 'vmacro07632' => 'vma', 'vmacro11110' => 'vma', 'vmacro20662' => 'vma', 'VMungo0251G3166' => 'vmu', 'VMungo0251G3488' => 'vmu', 'VMungo0331G1876' => 'vmu', 'VMungo0464G1186' => 'vmu', 'VMungo0647G2223' => 'vmu', 'Zm00001eb015390' => 'zma', 'Zm00001eb087140' => 'zma', 'Zm00001eb091340' => 'zma', 'Zm00001eb114590' => 'zma', 'Zm00001eb149950' => 'zma', 'Zm00001eb205450' => 'zma', 'Zm00001eb240400' => 'zma', 'Zm00001eb293940' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001437', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001437' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001437', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001437' ) ), 'genes' => array( 'A01p05720' => 'bna', 'A04p08800' => 'bna', 'A06p05630' => 'bna', 'A08p07010' => 'bna', 'Aa31LG8G11170' => 'aar', 'Aa31LG9G4400' => 'aar', 'Aa31sc20G220' => 'aar', 'Aa31sc91G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.364' => 'aag', 'Actinidia07417' => 'ach', 'Actinidia09409' => 'ach', 'Actinidia13292' => 'ach', 'Actinidia13858' => 'ach', 'Actinidia20344' => 'ach', 'Actinidia32689' => 'ach', 'Actinidia37838' => 'ach', 'Ah.12g062060' => 'amhyb', 'Ah.12g063080' => 'amhyb', 'Ah.14g081670' => 'amhyb', 'Ah.14g081680' => 'amhyb', 'AL1G19130' => 'aly', 'AL7G19130' => 'aly', 'AL9U10310' => 'aly', 'Aqoxy2G00065' => 'aox', 'Aqoxy7G01811' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15P38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61QI09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73LV1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7CLK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5LKUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV0YIE' => 'arhy', 'AT1G08680' => 'ath', 'AT4G13350' => 'ath', 'AT4G32630' => 'ath', 'ATR0037G054' => 'atr', 'ATR0068G023' => 'atr', 'Atru.chr2.1577' => 'acertr', 'Atru.chr7.1313' => 'acertr', 'Atru.chr7.2316' => 'acertr', 'AUR62011015' => 'cqu', 'AUR62021526' => 'cqu', 'AUR62024828' => 'cqu', 'AUR62032387' => 'cqu', 'AUR62036504' => 'cqu', 'AUR62037071' => 'cqu', 'BcaB03g16092' => 'bca', 'BcaB07g34108' => 'bca', 'BcaC02g09433' => 'bca', 'BcaC05g24796' => 'bca', 'BcaC07g37377' => 'bca', 'BcaC09g52056' => 'bca', 'BcaNung06955' => 'bca', 'BolC1t00628H' => 'bol', 'BolC4t25833H' => 'bol', 'BolC5t29437H' => 'bol', 'BolC8t47683H' => 'bol', 'BraA01t00542Z' => 'bra', 'BraA04t16573Z' => 'bra', 'BraA06t23772Z' => 'bra', 'BraA08t32710Z' => 'bra', 'C01p06300' => 'bna', 'C04p42690' => 'bna', 'C05p06780' => 'bna', 'C08p08300' => 'bna', 'CAN.G679.10' => 'can', 'CAN.G713.33' => 'can', 'CAN.G749.3' => 'can', 'CAN.G959.43' => 'can', 'CANSAT54G0023' => 'cansat', 'CANSAT56G0530' => 'cansat', 'CANSAT56G1349' => 'cansat', 'CANSAT78G1522' => 'cansat', 'CARHR008610' => 'chi', 'CARHR218900' => 'chi', 'CARHR240600' => 'chi', 'Carub.0001s0804' => 'cru', 'Carub.0007s0791' => 'cru', 'Carub.0007s2923' => 'cru', 'Ca_04457_v3' => 'car', 'Ca_12905_v3' => 'car', 'Ca_25439_v3' => 'car', 'Ca_25517_v3' => 'car', 'CBR_g21816' => 'cbr', 'Cc00_g04900' => 'ccan', 'Cc06_g09450' => 'ccan', 'Cc08_g08250' => 'ccan', 'CDE02G1040' => 'cde', 'CDE04G0677' => 'cde', 'CDE06G2637' => 'cde', 'CDE07G1079' => 'cde', 'CDE08G1382' => 'cde', 'CDE09G0794' => 'cde', 'Cfa003281' => 'cfa', 'Cfa013220' => 'cfa', 'Ciclev10007554m.g' => 'ccl', 'Ciclev10010498m.g' => 'ccl', 'Ciclev10030836m.g' => 'ccl', 'CiPaw.03G234400' => 'cil', 'CiPaw.04G166600' => 'cil', 'CiPaw.07G217000' => 'cil', 'CiPaw.08G016300' => 'cil', 'CiPaw.10G124600' => 'cil', 'ClCG05G017250' => 'cla', 'ClCG10G016700' => 'cla', 'ClCG11G002590' => 'cla', 'COL.COLO4_24073' => 'col', 'COL.COLO4_30345' => 'col', 'COL.COLO4_34887' => 'col', 'COL.COLO4_38560' => 'col', 'Cpa.g.sc205.35' => 'cpa', 'Cpa.g.sc23.124' => 'cpa', 'Cpa.g.sc73.19' => 'cpa', 'Cpa.g.sc91.2' => 'cpa', 'Cre06.g302900' => 'cre', 'CsaV3_2G002390' => 'csa', 'CsaV3_3G039660' => 'csa', 'CsaV3_3G046730' => 'csa', 'CSS0011204' => 'camsi', 'CSS0012476' => 'camsi', 'CSS0017855' => 'camsi', 'CSS0032954' => 'camsi', 'CSS0033969' => 'camsi', 'CSS0034517' => 'camsi', 'CSS0038503' => 'camsi', 'CSS0043534' => 'camsi', 'CSS0046561' => 'camsi', 'CSS0049489' => 'camsi', 'DCAR_001495' => 'dca', 'DCAR_006260' => 'dca', 'DCAR_009088' => 'dca', 'DCAR_013499' => 'dca', 'DCAR_017829' => 'dca', 'DCAR_024706' => 'dca', 'DCAR_031958' => 'dca', 'Dinv30218' => 'din', 'Dinv30219' => 'din', 'Dinv30523' => 'din', 'Dinv35876' => 'din', 'Dinv36609' => 'din', 'Dinv37037' => 'din', 'Dinv41584' => 'din', 'Duzib106G0268' => 'dzi', 'Duzib128G0706' => 'dzi', 'Duzib150G0759' => 'dzi', 'Duzib168G2108' => 'dzi', 'Duzib187G0293' => 'dzi', 'ECA234G0831' => 'eca', 'ECA236G0736' => 'eca', 'ECA240G0084' => 'eca', 'EL10Ac2g02531' => 'bvu', 'EL10Ac8g18522' => 'bvu', 'EL10Ac8g19573' => 'bvu', 'EL10Ac9g21591' => 'bvu', 'Eucgr.A01700' => 'egr', 'Eucgr.C01068' => 'egr', 'Eucgr.K01548' => 'egr', 'FAN15G0311' => 'fan', 'FAN19G0712' => 'fan', 'FAN19G0786' => 'fan', 'FAN20G2175' => 'fan', 'FAN23G2212' => 'fan', 'FAN24G0293' => 'fan', 'FAN26G1169' => 'fan', 'FAN26G1470' => 'fan', 'FAN26G2075' => 'fan', 'FAN27G0132' => 'fan', 'FAN28G0104' => 'fan', 'FAN28G1375' => 'fan', 'FvH4_1g05240' => 'fve', 'FvH4_1g29630' => 'fve', 'FvH4_2g30220' => 'fve', 'Glyma.03G006000' => 'gma', 'Glyma.05G088000' => 'gma', 'Glyma.05G232200' => 'gma', 'Glyma.07G088500' => 'gma', 'Glyma.08G039600' => 'gma', 'Glyma.09G188300' => 'gma', 'Glyma.14G129900' => 'gma', 'Glyma.17G203600' => 'gma', 'Glyma.19G067400' => 'gma', 'Glyma.19G120051' => 'gma', 'Gohir.A05G011100' => 'ghi', 'Gohir.A05G021800' => 'ghi', 'Gohir.A06G048300' => 'ghi', 'Gohir.A06G060900' => 'ghi', 'Gohir.A08G240700' => 'ghi', 'Gohir.A09G083901' => 'ghi', 'Gohir.A11G224206' => 'ghi', 'Gohir.A11G300500' => 'ghi', 'Gohir.D05G011800' => 'ghi', 'Gohir.D05G023400' => 'ghi', 'Gohir.D06G048300' => 'ghi', 'Gohir.D06G059300' => 'ghi', 'Gohir.D08G261400' => 'ghi', 'Gohir.D09G083700' => 'ghi', 'Gohir.D11G237800' => 'ghi', 'Gohir.D11G315300' => 'ghi', 'Gorai.004G279500' => 'gra', 'Gorai.006G099600' => 'gra', 'Gorai.006G099700' => 'gra', 'Gorai.007G251300' => 'gra', 'Gorai.007G346500' => 'gra', 'Gorai.009G012100' => 'gra', 'Gorai.009G023500' => 'gra', 'Gorai.010G054100' => 'gra', 'Gorai.010G069100' => 'gra', 'GSVIVG01015419001' => 'vvi', 'GSVIVG01017129001' => 'vvi', 'GSVIVG01029915001' => 'vvi', 'GSVIVG01035737001' => 'vvi', 'HanXRQChr03g0061951' => 'han', 'HanXRQChr04g0125501' => 'han', 'HanXRQChr06g0178091' => 'han', 'HanXRQChr09g0239781' => 'han', 'HanXRQChr09g0239801' => 'han', 'HanXRQChr10g0317821' => 'han', 'Haze_20375' => 'cav', 'Haze_21635' => 'cav', 'Haze_25691' => 'cav', 'Hma1.2p1_0018F.1_g013230' => 'hma', 'Hma1.2p1_0165F.1_g073400' => 'hma', 'Hma1.2p1_0175F.1_g077322' => 'hma', 'Hma1.2p1_0175F.1_g077324' => 'hma', 'Hma1.2p1_1215F.1_g267620' => 'hma', 'HPP92_002910' => 'vpl', 'HPP92_002911' => 'vpl', 'HPP92_005546' => 'vpl', 'Hund09192' => 'sun', 'Hund25655' => 'sun', 'Hund26136' => 'sun', 'Lalb_Chr02g0157591' => 'lal', 'Lalb_Chr05g0222691' => 'lal', 'Lalb_Chr06g0174161' => 'lal', 'Lalb_Chr08g0243741' => 'lal', 'Lalb_Chr08g0243751' => 'lal', 'Lalb_Chr09g0331141' => 'lal', 'Lalb_Chr14g0371371' => 'lal', 'Lalb_Chr22g0352941' => 'lal', 'Lj2A416G33' => 'lonja', 'Lj2g0022086' => 'lja', 'Lj2g0023387' => 'lja', 'Lj4g0011940' => 'lja', 'Lj5g0013721' => 'lja', 'Lj7A646G40' => 'lonja', 'Lj7A646G41' => 'lonja', 'Lj7A711G47' => 'lonja', 'Lj7A711T50' => 'lonja', 'Lj8A609T42' => 'lonja', 'Lsat_1_v5_gn_1_125940' => 'lsa', 'Lsat_1_v5_gn_3_80100' => 'lsa', 'Lsat_1_v5_gn_5_1000' => 'lsa', 'Lsat_1_v5_gn_7_42361' => 'lsa', 'Lsat_1_v5_gn_8_83661' => 'lsa', 'Manes.03G067000' => 'mes', 'Manes.08G150600' => 'mes', 'Manes.09G135500' => 'mes', 'Manes.16G068700' => 'mes', 'Manes.16G070500' => 'mes', 'Mapoly0032s0108' => 'mpo', 'MBI01_g16636_MAGBIO' => 'mbi', 'MBI02_g07510_MAGBIO' => 'mbi', 'MBI04_g40088_MAGBIO' => 'mbi', 'MBI19_g30306_MAGBIO' => 'mbi', 'MBI19_g32310_MAGBIO' => 'mbi', 'MBI19_g40248_MAGBIO' => 'mbi', 'MCO11G774' => 'mco', 'MD02G1063100' => 'mdo', 'MD08G1135500' => 'mdo', 'MD12G1014100' => 'mdo', 'MD14G1011500' => 'mdo', 'MD15G1114500' => 'mdo', 'MD15G1188600' => 'mdo', 'Medtr1g010280' => 'mtr', 'Medtr4g025560' => 'mtr', 'Medtr6g027300' => 'mtr', 'Medtr6g086630' => 'mtr', 'Medtr8g103750' => 'mtr', 'MELO3C003662.2' => 'cme', 'MELO3C004547.2' => 'cme', 'MELO3C009707.2' => 'cme', 'Migut.A00267' => 'egut', 'Migut.J01581' => 'egut', 'Migut.K00184' => 'egut', 'Migut.K00462' => 'egut', 'Migut.L00406' => 'egut', 'MSTRG.10681' => 'ama', 'MSTRG.19757' => 'ama', 'MSTRG.6272' => 'ama', 'Nitab4.5_0000123g0070' => 'nta', 'Nitab4.5_0000125g0400' => 'nta', 'Nitab4.5_0001672g0150' => 'nta', 'Nitab4.5_0005047g0020' => 'nta', 'Nitab4.5_0007999g0030' => 'nta', 'Nitab4.5_0009945g0030' => 'nta', 'Nn2g11804' => 'nnu', 'Nn2g14730' => 'nnu', 'Nn8g39251' => 'nnu', 'Oeu018265.1' => 'oeu', 'Oeu023032.1' => 'oeu', 'Oeu027163.1' => 'oeu', 'Oeu027164.1' => 'oeu', 'Oeu044219.1' => 'oeu', 'Oeu045172.1' => 'oeu', 'Oeu048662.2' => 'oeu', 'Os01g0813900' => 'osa', 'Os02g0208900' => 'osa', 'Os03g0323500' => 'osa', 'Os05g0534800' => 'osa', 'Peaxi162Scf00003g05391' => 'pax', 'Peaxi162Scf00105g01225' => 'pax', 'Peaxi162Scf00546g00325' => 'pax', 'Peaxi162Scf00560g00513' => 'pax', 'PGR044G0999' => 'pgr', 'PGR142G2142' => 'pgr', 'PGR142G2361' => 'pgr', 'PGSC0003DMG400000322' => 'stu', 'PGSC0003DMG400007207' => 'stu', 'PGSC0003DMG400014483' => 'stu', 'Phvul.001G056000' => 'pvu', 'Phvul.002G314400' => 'pvu', 'Phvul.002G314500' => 'pvu', 'Phvul.004G052500' => 'pvu', 'Potri.006G246100' => 'ptr', 'Potri.013G068300' => 'ptr', 'Potri.018G035000' => 'ptr', 'Potri.018G076200' => 'ptr', 'Pp3c10_10670' => 'ppa', 'Pp3c14_22720' => 'ppa', 'Pp3c1_39920' => 'ppa', 'Pp3c1_70' => 'ppa', 'Pp3c2_28440' => 'ppa', 'PRCOL_00005201' => 'pco', 'Prupe.1G466000' => 'ppe', 'Prupe.7G026600' => 'ppe', 'Prupe.7G227900' => 'ppe', 'Psat1g039840' => 'psa', 'Psat1g088560' => 'psa', 'Psat6g031160' => 'psa', 'Psat7g014040' => 'psa', 'PSO063G5179' => 'pso', 'PSO210G5730' => 'pso', 'PSO210G6127' => 'pso', 'PSO541G0531' => 'pso', 'PSO675G2600' => 'pso', 'PSO782G3465' => 'pso', 'QL02p085888' => 'qlo', 'QL07p016355' => 'qlo', 'QL07p016401' => 'qlo', 'QL12p031169' => 'qlo', 'RcHm_v2.0_Chr2g0090971' => 'rch', 'RcHm_v2.0_Chr3g0495661' => 'rch', 'RcHm_v2.0_Chr6g0312661' => 'rch', 'Rhsim02G0186900' => 'rsi', 'Rhsim03G0045400' => 'rsi', 'Rhsim03G0244400' => 'rsi', 'Sabra06G0192600' => 'sbr', 'Sabra13G0059600' => 'sbr', 'Sabra18G0035800' => 'sbr', 'Sabra18G0064900' => 'sbr', 'SalBow1G0918' => 'sbo', 'SalBow1G5635' => 'sbo', 'SalBow1G7355' => 'sbo', 'SalBow2G0895' => 'sbo', 'SalBow4G3273' => 'sbo', 'SalBow6G5163' => 'sbo', 'Sc08g0007330' => 'sci', 'Sc18g0001100' => 'sci', 'Sc23g0005800' => 'sci', 'Sc23g0005810' => 'sci', 'Sed0000587' => 'sed', 'Sed0000855' => 'sed', 'Sed0021010' => 'sed', 'Sed0023292' => 'sed', 'SEGI_01593' => 'sgi', 'SEGI_02777' => 'sgi', 'SEGI_32372' => 'sgi', 'SGA_v2.0_scaffold106G30577' => 'sas', 'SGA_v2.0_scaffold109G31040' => 'sas', 'SGA_v2.0_scaffold240G44154' => 'sas', 'SGA_v2.0_scaffold27G11504' => 'sas', 'SHI02629' => 'shi', 'SHI14842' => 'shi', 'SMO351G0452' => 'smo', 'Solyc08g067930.4' => 'sly', 'Solyc10g076990.3' => 'sly', 'Solyc12g006990.2' => 'sly', 'Sopen08g021840' => 'spe', 'Sopen10g028670' => 'spe', 'Sopen12g002950' => 'spe', 'Sp1g07340' => 'spa', 'Sp7g10920' => 'spa', 'Sp7g30400' => 'spa', 'TAR383G0599' => 'tar', 'TAR586G0001' => 'tar', 'TAR586G0002' => 'tar', 'TAR624G0085' => 'tar', 'TAR636G1076' => 'tar', 'TAR636G2605' => 'tar', 'THA.LOC104804514' => 'tha', 'THA.LOC104808754' => 'tha', 'THA.LOC104821335' => 'tha', 'THA.LOC104823770' => 'tha', 'Thecc.05G237700' => 'tca', 'Thecc.06G084200' => 'tca', 'Thecc.09G113500' => 'tca', 'Thecc.09G143600' => 'tca', 'Thhalv10007026m.g' => 'esa', 'Thhalv10024655m.g' => 'esa', 'Thhalv10024713m.g' => 'esa', 'TPR.G21675' => 'tpr', 'TPR.G33939' => 'tpr', 'TPR.G38992' => 'tpr', 'TWI32G0814' => 'twi', 'TWI32G1313' => 'twi', 'TWI34G1393' => 'twi', 'TWI34G1746' => 'twi', 'TWI60G0413' => 'twi', 'TWI63G1217' => 'twi', 'unitig_0.g2729' => 'ugi', 'unitig_37.g12222' => 'ugi', 'vmacro06202' => 'vma', 'vmacro07632' => 'vma', 'vmacro11110' => 'vma', 'vmacro20662' => 'vma', 'VMungo0251G3166' => 'vmu', 'VMungo0251G3488' => 'vmu', 'VMungo0331G1876' => 'vmu', 'VMungo0464G1186' => 'vmu', 'VMungo0647G2223' => 'vmu', 'Zm00001eb015390' => 'zma', 'Zm00001eb087140' => 'zma', 'Zm00001eb091340' => 'zma', 'Zm00001eb114590' => 'zma', 'Zm00001eb149950' => 'zma', 'Zm00001eb205450' => 'zma', 'Zm00001eb240400' => 'zma', 'Zm00001eb293940' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001437' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001437' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001437' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001437' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001437', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p05720' => 'bna', 'A04p08800' => 'bna', 'A06p05630' => 'bna', 'A08p07010' => 'bna', 'Aa31LG8G11170' => 'aar', 'Aa31LG9G4400' => 'aar', 'Aa31sc20G220' => 'aar', 'Aa31sc91G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.364' => 'aag', 'Actinidia07417' => 'ach', 'Actinidia09409' => 'ach', 'Actinidia13292' => 'ach', 'Actinidia13858' => 'ach', 'Actinidia20344' => 'ach', 'Actinidia32689' => 'ach', 'Actinidia37838' => 'ach', 'Ah.12g062060' => 'amhyb', 'Ah.12g063080' => 'amhyb', 'Ah.14g081670' => 'amhyb', 'Ah.14g081680' => 'amhyb', 'AL1G19130' => 'aly', 'AL7G19130' => 'aly', 'AL9U10310' => 'aly', 'Aqoxy2G00065' => 'aox', 'Aqoxy7G01811' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15P38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61QI09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73LV1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7CLK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5LKUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV0YIE' => 'arhy', 'AT1G08680' => 'ath', 'AT4G13350' => 'ath', 'AT4G32630' => 'ath', 'ATR0037G054' => 'atr', 'ATR0068G023' => 'atr', 'Atru.chr2.1577' => 'acertr', 'Atru.chr7.1313' => 'acertr', 'Atru.chr7.2316' => 'acertr', 'AUR62011015' => 'cqu', 'AUR62021526' => 'cqu', 'AUR62024828' => 'cqu', 'AUR62032387' => 'cqu', 'AUR62036504' => 'cqu', 'AUR62037071' => 'cqu', 'BcaB03g16092' => 'bca', 'BcaB07g34108' => 'bca', 'BcaC02g09433' => 'bca', 'BcaC05g24796' => 'bca', 'BcaC07g37377' => 'bca', 'BcaC09g52056' => 'bca', 'BcaNung06955' => 'bca', 'BolC1t00628H' => 'bol', 'BolC4t25833H' => 'bol', 'BolC5t29437H' => 'bol', 'BolC8t47683H' => 'bol', 'BraA01t00542Z' => 'bra', 'BraA04t16573Z' => 'bra', 'BraA06t23772Z' => 'bra', 'BraA08t32710Z' => 'bra', 'C01p06300' => 'bna', 'C04p42690' => 'bna', 'C05p06780' => 'bna', 'C08p08300' => 'bna', 'CAN.G679.10' => 'can', 'CAN.G713.33' => 'can', 'CAN.G749.3' => 'can', 'CAN.G959.43' => 'can', 'CANSAT54G0023' => 'cansat', 'CANSAT56G0530' => 'cansat', 'CANSAT56G1349' => 'cansat', 'CANSAT78G1522' => 'cansat', 'CARHR008610' => 'chi', 'CARHR218900' => 'chi', 'CARHR240600' => 'chi', 'Carub.0001s0804' => 'cru', 'Carub.0007s0791' => 'cru', 'Carub.0007s2923' => 'cru', 'Ca_04457_v3' => 'car', 'Ca_12905_v3' => 'car', 'Ca_25439_v3' => 'car', 'Ca_25517_v3' => 'car', 'CBR_g21816' => 'cbr', 'Cc00_g04900' => 'ccan', 'Cc06_g09450' => 'ccan', 'Cc08_g08250' => 'ccan', 'CDE02G1040' => 'cde', 'CDE04G0677' => 'cde', 'CDE06G2637' => 'cde', 'CDE07G1079' => 'cde', 'CDE08G1382' => 'cde', 'CDE09G0794' => 'cde', 'Cfa003281' => 'cfa', 'Cfa013220' => 'cfa', 'Ciclev10007554m.g' => 'ccl', 'Ciclev10010498m.g' => 'ccl', 'Ciclev10030836m.g' => 'ccl', 'CiPaw.03G234400' => 'cil', 'CiPaw.04G166600' => 'cil', 'CiPaw.07G217000' => 'cil', 'CiPaw.08G016300' => 'cil', 'CiPaw.10G124600' => 'cil', 'ClCG05G017250' => 'cla', 'ClCG10G016700' => 'cla', 'ClCG11G002590' => 'cla', 'COL.COLO4_24073' => 'col', 'COL.COLO4_30345' => 'col', 'COL.COLO4_34887' => 'col', 'COL.COLO4_38560' => 'col', 'Cpa.g.sc205.35' => 'cpa', 'Cpa.g.sc23.124' => 'cpa', 'Cpa.g.sc73.19' => 'cpa', 'Cpa.g.sc91.2' => 'cpa', 'Cre06.g302900' => 'cre', 'CsaV3_2G002390' => 'csa', 'CsaV3_3G039660' => 'csa', 'CsaV3_3G046730' => 'csa', 'CSS0011204' => 'camsi', 'CSS0012476' => 'camsi', 'CSS0017855' => 'camsi', 'CSS0032954' => 'camsi', 'CSS0033969' => 'camsi', 'CSS0034517' => 'camsi', 'CSS0038503' => 'camsi', 'CSS0043534' => 'camsi', 'CSS0046561' => 'camsi', 'CSS0049489' => 'camsi', 'DCAR_001495' => 'dca', 'DCAR_006260' => 'dca', 'DCAR_009088' => 'dca', 'DCAR_013499' => 'dca', 'DCAR_017829' => 'dca', 'DCAR_024706' => 'dca', 'DCAR_031958' => 'dca', 'Dinv30218' => 'din', 'Dinv30219' => 'din', 'Dinv30523' => 'din', 'Dinv35876' => 'din', 'Dinv36609' => 'din', 'Dinv37037' => 'din', 'Dinv41584' => 'din', 'Duzib106G0268' => 'dzi', 'Duzib128G0706' => 'dzi', 'Duzib150G0759' => 'dzi', 'Duzib168G2108' => 'dzi', 'Duzib187G0293' => 'dzi', 'ECA234G0831' => 'eca', 'ECA236G0736' => 'eca', 'ECA240G0084' => 'eca', 'EL10Ac2g02531' => 'bvu', 'EL10Ac8g18522' => 'bvu', 'EL10Ac8g19573' => 'bvu', 'EL10Ac9g21591' => 'bvu', 'Eucgr.A01700' => 'egr', 'Eucgr.C01068' => 'egr', 'Eucgr.K01548' => 'egr', 'FAN15G0311' => 'fan', 'FAN19G0712' => 'fan', 'FAN19G0786' => 'fan', 'FAN20G2175' => 'fan', 'FAN23G2212' => 'fan', 'FAN24G0293' => 'fan', 'FAN26G1169' => 'fan', 'FAN26G1470' => 'fan', 'FAN26G2075' => 'fan', 'FAN27G0132' => 'fan', 'FAN28G0104' => 'fan', 'FAN28G1375' => 'fan', 'FvH4_1g05240' => 'fve', 'FvH4_1g29630' => 'fve', 'FvH4_2g30220' => 'fve', 'Glyma.03G006000' => 'gma', 'Glyma.05G088000' => 'gma', 'Glyma.05G232200' => 'gma', 'Glyma.07G088500' => 'gma', 'Glyma.08G039600' => 'gma', 'Glyma.09G188300' => 'gma', 'Glyma.14G129900' => 'gma', 'Glyma.17G203600' => 'gma', 'Glyma.19G067400' => 'gma', 'Glyma.19G120051' => 'gma', 'Gohir.A05G011100' => 'ghi', 'Gohir.A05G021800' => 'ghi', 'Gohir.A06G048300' => 'ghi', 'Gohir.A06G060900' => 'ghi', 'Gohir.A08G240700' => 'ghi', 'Gohir.A09G083901' => 'ghi', 'Gohir.A11G224206' => 'ghi', 'Gohir.A11G300500' => 'ghi', 'Gohir.D05G011800' => 'ghi', 'Gohir.D05G023400' => 'ghi', 'Gohir.D06G048300' => 'ghi', 'Gohir.D06G059300' => 'ghi', 'Gohir.D08G261400' => 'ghi', 'Gohir.D09G083700' => 'ghi', 'Gohir.D11G237800' => 'ghi', 'Gohir.D11G315300' => 'ghi', 'Gorai.004G279500' => 'gra', 'Gorai.006G099600' => 'gra', 'Gorai.006G099700' => 'gra', 'Gorai.007G251300' => 'gra', 'Gorai.007G346500' => 'gra', 'Gorai.009G012100' => 'gra', 'Gorai.009G023500' => 'gra', 'Gorai.010G054100' => 'gra', 'Gorai.010G069100' => 'gra', 'GSVIVG01015419001' => 'vvi', 'GSVIVG01017129001' => 'vvi', 'GSVIVG01029915001' => 'vvi', 'GSVIVG01035737001' => 'vvi', 'HanXRQChr03g0061951' => 'han', 'HanXRQChr04g0125501' => 'han', 'HanXRQChr06g0178091' => 'han', 'HanXRQChr09g0239781' => 'han', 'HanXRQChr09g0239801' => 'han', 'HanXRQChr10g0317821' => 'han', 'Haze_20375' => 'cav', 'Haze_21635' => 'cav', 'Haze_25691' => 'cav', 'Hma1.2p1_0018F.1_g013230' => 'hma', 'Hma1.2p1_0165F.1_g073400' => 'hma', 'Hma1.2p1_0175F.1_g077322' => 'hma', 'Hma1.2p1_0175F.1_g077324' => 'hma', 'Hma1.2p1_1215F.1_g267620' => 'hma', 'HPP92_002910' => 'vpl', 'HPP92_002911' => 'vpl', 'HPP92_005546' => 'vpl', 'Hund09192' => 'sun', 'Hund25655' => 'sun', 'Hund26136' => 'sun', 'Lalb_Chr02g0157591' => 'lal', 'Lalb_Chr05g0222691' => 'lal', 'Lalb_Chr06g0174161' => 'lal', 'Lalb_Chr08g0243741' => 'lal', 'Lalb_Chr08g0243751' => 'lal', 'Lalb_Chr09g0331141' => 'lal', 'Lalb_Chr14g0371371' => 'lal', 'Lalb_Chr22g0352941' => 'lal', 'Lj2A416G33' => 'lonja', 'Lj2g0022086' => 'lja', 'Lj2g0023387' => 'lja', 'Lj4g0011940' => 'lja', 'Lj5g0013721' => 'lja', 'Lj7A646G40' => 'lonja', 'Lj7A646G41' => 'lonja', 'Lj7A711G47' => 'lonja', 'Lj7A711T50' => 'lonja', 'Lj8A609T42' => 'lonja', 'Lsat_1_v5_gn_1_125940' => 'lsa', 'Lsat_1_v5_gn_3_80100' => 'lsa', 'Lsat_1_v5_gn_5_1000' => 'lsa', 'Lsat_1_v5_gn_7_42361' => 'lsa', 'Lsat_1_v5_gn_8_83661' => 'lsa', 'Manes.03G067000' => 'mes', 'Manes.08G150600' => 'mes', 'Manes.09G135500' => 'mes', 'Manes.16G068700' => 'mes', 'Manes.16G070500' => 'mes', 'Mapoly0032s0108' => 'mpo', 'MBI01_g16636_MAGBIO' => 'mbi', 'MBI02_g07510_MAGBIO' => 'mbi', 'MBI04_g40088_MAGBIO' => 'mbi', 'MBI19_g30306_MAGBIO' => 'mbi', 'MBI19_g32310_MAGBIO' => 'mbi', 'MBI19_g40248_MAGBIO' => 'mbi', 'MCO11G774' => 'mco', 'MD02G1063100' => 'mdo', 'MD08G1135500' => 'mdo', 'MD12G1014100' => 'mdo', 'MD14G1011500' => 'mdo', 'MD15G1114500' => 'mdo', 'MD15G1188600' => 'mdo', 'Medtr1g010280' => 'mtr', 'Medtr4g025560' => 'mtr', 'Medtr6g027300' => 'mtr', 'Medtr6g086630' => 'mtr', 'Medtr8g103750' => 'mtr', 'MELO3C003662.2' => 'cme', 'MELO3C004547.2' => 'cme', 'MELO3C009707.2' => 'cme', 'Migut.A00267' => 'egut', 'Migut.J01581' => 'egut', 'Migut.K00184' => 'egut', 'Migut.K00462' => 'egut', 'Migut.L00406' => 'egut', 'MSTRG.10681' => 'ama', 'MSTRG.19757' => 'ama', 'MSTRG.6272' => 'ama', 'Nitab4.5_0000123g0070' => 'nta', 'Nitab4.5_0000125g0400' => 'nta', 'Nitab4.5_0001672g0150' => 'nta', 'Nitab4.5_0005047g0020' => 'nta', 'Nitab4.5_0007999g0030' => 'nta', 'Nitab4.5_0009945g0030' => 'nta', 'Nn2g11804' => 'nnu', 'Nn2g14730' => 'nnu', 'Nn8g39251' => 'nnu', 'Oeu018265.1' => 'oeu', 'Oeu023032.1' => 'oeu', 'Oeu027163.1' => 'oeu', 'Oeu027164.1' => 'oeu', 'Oeu044219.1' => 'oeu', 'Oeu045172.1' => 'oeu', 'Oeu048662.2' => 'oeu', 'Os01g0813900' => 'osa', 'Os02g0208900' => 'osa', 'Os03g0323500' => 'osa', 'Os05g0534800' => 'osa', 'Peaxi162Scf00003g05391' => 'pax', 'Peaxi162Scf00105g01225' => 'pax', 'Peaxi162Scf00546g00325' => 'pax', 'Peaxi162Scf00560g00513' => 'pax', 'PGR044G0999' => 'pgr', 'PGR142G2142' => 'pgr', 'PGR142G2361' => 'pgr', 'PGSC0003DMG400000322' => 'stu', 'PGSC0003DMG400007207' => 'stu', 'PGSC0003DMG400014483' => 'stu', 'Phvul.001G056000' => 'pvu', 'Phvul.002G314400' => 'pvu', 'Phvul.002G314500' => 'pvu', 'Phvul.004G052500' => 'pvu', 'Potri.006G246100' => 'ptr', 'Potri.013G068300' => 'ptr', 'Potri.018G035000' => 'ptr', 'Potri.018G076200' => 'ptr', 'Pp3c10_10670' => 'ppa', 'Pp3c14_22720' => 'ppa', 'Pp3c1_39920' => 'ppa', 'Pp3c1_70' => 'ppa', 'Pp3c2_28440' => 'ppa', 'PRCOL_00005201' => 'pco', 'Prupe.1G466000' => 'ppe', 'Prupe.7G026600' => 'ppe', 'Prupe.7G227900' => 'ppe', 'Psat1g039840' => 'psa', 'Psat1g088560' => 'psa', 'Psat6g031160' => 'psa', 'Psat7g014040' => 'psa', 'PSO063G5179' => 'pso', 'PSO210G5730' => 'pso', 'PSO210G6127' => 'pso', 'PSO541G0531' => 'pso', 'PSO675G2600' => 'pso', 'PSO782G3465' => 'pso', 'QL02p085888' => 'qlo', 'QL07p016355' => 'qlo', 'QL07p016401' => 'qlo', 'QL12p031169' => 'qlo', 'RcHm_v2.0_Chr2g0090971' => 'rch', 'RcHm_v2.0_Chr3g0495661' => 'rch', 'RcHm_v2.0_Chr6g0312661' => 'rch', 'Rhsim02G0186900' => 'rsi', 'Rhsim03G0045400' => 'rsi', 'Rhsim03G0244400' => 'rsi', 'Sabra06G0192600' => 'sbr', 'Sabra13G0059600' => 'sbr', 'Sabra18G0035800' => 'sbr', 'Sabra18G0064900' => 'sbr', 'SalBow1G0918' => 'sbo', 'SalBow1G5635' => 'sbo', 'SalBow1G7355' => 'sbo', 'SalBow2G0895' => 'sbo', 'SalBow4G3273' => 'sbo', 'SalBow6G5163' => 'sbo', 'Sc08g0007330' => 'sci', 'Sc18g0001100' => 'sci', 'Sc23g0005800' => 'sci', 'Sc23g0005810' => 'sci', 'Sed0000587' => 'sed', 'Sed0000855' => 'sed', 'Sed0021010' => 'sed', 'Sed0023292' => 'sed', 'SEGI_01593' => 'sgi', 'SEGI_02777' => 'sgi', 'SEGI_32372' => 'sgi', 'SGA_v2.0_scaffold106G30577' => 'sas', 'SGA_v2.0_scaffold109G31040' => 'sas', 'SGA_v2.0_scaffold240G44154' => 'sas', 'SGA_v2.0_scaffold27G11504' => 'sas', 'SHI02629' => 'shi', 'SHI14842' => 'shi', 'SMO351G0452' => 'smo', 'Solyc08g067930.4' => 'sly', 'Solyc10g076990.3' => 'sly', 'Solyc12g006990.2' => 'sly', 'Sopen08g021840' => 'spe', 'Sopen10g028670' => 'spe', 'Sopen12g002950' => 'spe', 'Sp1g07340' => 'spa', 'Sp7g10920' => 'spa', 'Sp7g30400' => 'spa', 'TAR383G0599' => 'tar', 'TAR586G0001' => 'tar', 'TAR586G0002' => 'tar', 'TAR624G0085' => 'tar', 'TAR636G1076' => 'tar', 'TAR636G2605' => 'tar', 'THA.LOC104804514' => 'tha', 'THA.LOC104808754' => 'tha', 'THA.LOC104821335' => 'tha', 'THA.LOC104823770' => 'tha', 'Thecc.05G237700' => 'tca', 'Thecc.06G084200' => 'tca', 'Thecc.09G113500' => 'tca', 'Thecc.09G143600' => 'tca', 'Thhalv10007026m.g' => 'esa', 'Thhalv10024655m.g' => 'esa', 'Thhalv10024713m.g' => 'esa', 'TPR.G21675' => 'tpr', 'TPR.G33939' => 'tpr', 'TPR.G38992' => 'tpr', 'TWI32G0814' => 'twi', 'TWI32G1313' => 'twi', 'TWI34G1393' => 'twi', 'TWI34G1746' => 'twi', 'TWI60G0413' => 'twi', 'TWI63G1217' => 'twi', 'unitig_0.g2729' => 'ugi', 'unitig_37.g12222' => 'ugi', 'vmacro06202' => 'vma', 'vmacro07632' => 'vma', 'vmacro11110' => 'vma', 'vmacro20662' => 'vma', 'VMungo0251G3166' => 'vmu', 'VMungo0251G3488' => 'vmu', 'VMungo0331G1876' => 'vmu', 'VMungo0464G1186' => 'vmu', 'VMungo0647G2223' => 'vmu', 'Zm00001eb015390' => 'zma', 'Zm00001eb087140' => 'zma', 'Zm00001eb091340' => 'zma', 'Zm00001eb114590' => 'zma', 'Zm00001eb149950' => 'zma', 'Zm00001eb205450' => 'zma', 'Zm00001eb240400' => 'zma', 'Zm00001eb293940' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001437', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001437' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001437', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '438', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001437' ) ), 'genes' => array( 'A01p05720' => 'bna', 'A04p08800' => 'bna', 'A06p05630' => 'bna', 'A08p07010' => 'bna', 'Aa31LG8G11170' => 'aar', 'Aa31LG9G4400' => 'aar', 'Aa31sc20G220' => 'aar', 'Aa31sc91G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1896' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.364' => 'aag', 'Actinidia07417' => 'ach', 'Actinidia09409' => 'ach', 'Actinidia13292' => 'ach', 'Actinidia13858' => 'ach', 'Actinidia20344' => 'ach', 'Actinidia32689' => 'ach', 'Actinidia37838' => 'ach', 'Ah.12g062060' => 'amhyb', 'Ah.12g063080' => 'amhyb', 'Ah.14g081670' => 'amhyb', 'Ah.14g081680' => 'amhyb', 'AL1G19130' => 'aly', 'AL7G19130' => 'aly', 'AL9U10310' => 'aly', 'Aqoxy2G00065' => 'aox', 'Aqoxy7G01811' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15P38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61QI09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73LV1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7CLK78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5LKUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZV0YIE' => 'arhy', 'AT1G08680' => 'ath', 'AT4G13350' => 'ath', 'AT4G32630' => 'ath', 'ATR0037G054' => 'atr', 'ATR0068G023' => 'atr', 'Atru.chr2.1577' => 'acertr', 'Atru.chr7.1313' => 'acertr', 'Atru.chr7.2316' => 'acertr', 'AUR62011015' => 'cqu', 'AUR62021526' => 'cqu', 'AUR62024828' => 'cqu', 'AUR62032387' => 'cqu', 'AUR62036504' => 'cqu', 'AUR62037071' => 'cqu', 'BcaB03g16092' => 'bca', 'BcaB07g34108' => 'bca', 'BcaC02g09433' => 'bca', 'BcaC05g24796' => 'bca', 'BcaC07g37377' => 'bca', 'BcaC09g52056' => 'bca', 'BcaNung06955' => 'bca', 'BolC1t00628H' => 'bol', 'BolC4t25833H' => 'bol', 'BolC5t29437H' => 'bol', 'BolC8t47683H' => 'bol', 'BraA01t00542Z' => 'bra', 'BraA04t16573Z' => 'bra', 'BraA06t23772Z' => 'bra', 'BraA08t32710Z' => 'bra', 'C01p06300' => 'bna', 'C04p42690' => 'bna', 'C05p06780' => 'bna', 'C08p08300' => 'bna', 'CAN.G679.10' => 'can', 'CAN.G713.33' => 'can', 'CAN.G749.3' => 'can', 'CAN.G959.43' => 'can', 'CANSAT54G0023' => 'cansat', 'CANSAT56G0530' => 'cansat', 'CANSAT56G1349' => 'cansat', 'CANSAT78G1522' => 'cansat', 'CARHR008610' => 'chi', 'CARHR218900' => 'chi', 'CARHR240600' => 'chi', 'Carub.0001s0804' => 'cru', 'Carub.0007s0791' => 'cru', 'Carub.0007s2923' => 'cru', 'Ca_04457_v3' => 'car', 'Ca_12905_v3' => 'car', 'Ca_25439_v3' => 'car', 'Ca_25517_v3' => 'car', 'CBR_g21816' => 'cbr', 'Cc00_g04900' => 'ccan', 'Cc06_g09450' => 'ccan', 'Cc08_g08250' => 'ccan', 'CDE02G1040' => 'cde', 'CDE04G0677' => 'cde', 'CDE06G2637' => 'cde', 'CDE07G1079' => 'cde', 'CDE08G1382' => 'cde', 'CDE09G0794' => 'cde', 'Cfa003281' => 'cfa', 'Cfa013220' => 'cfa', 'Ciclev10007554m.g' => 'ccl', 'Ciclev10010498m.g' => 'ccl', 'Ciclev10030836m.g' => 'ccl', 'CiPaw.03G234400' => 'cil', 'CiPaw.04G166600' => 'cil', 'CiPaw.07G217000' => 'cil', 'CiPaw.08G016300' => 'cil', 'CiPaw.10G124600' => 'cil', 'ClCG05G017250' => 'cla', 'ClCG10G016700' => 'cla', 'ClCG11G002590' => 'cla', 'COL.COLO4_24073' => 'col', 'COL.COLO4_30345' => 'col', 'COL.COLO4_34887' => 'col', 'COL.COLO4_38560' => 'col', 'Cpa.g.sc205.35' => 'cpa', 'Cpa.g.sc23.124' => 'cpa', 'Cpa.g.sc73.19' => 'cpa', 'Cpa.g.sc91.2' => 'cpa', 'Cre06.g302900' => 'cre', 'CsaV3_2G002390' => 'csa', 'CsaV3_3G039660' => 'csa', 'CsaV3_3G046730' => 'csa', 'CSS0011204' => 'camsi', 'CSS0012476' => 'camsi', 'CSS0017855' => 'camsi', 'CSS0032954' => 'camsi', 'CSS0033969' => 'camsi', 'CSS0034517' => 'camsi', 'CSS0038503' => 'camsi', 'CSS0043534' => 'camsi', 'CSS0046561' => 'camsi', 'CSS0049489' => 'camsi', 'DCAR_001495' => 'dca', 'DCAR_006260' => 'dca', 'DCAR_009088' => 'dca', 'DCAR_013499' => 'dca', 'DCAR_017829' => 'dca', 'DCAR_024706' => 'dca', 'DCAR_031958' => 'dca', 'Dinv30218' => 'din', 'Dinv30219' => 'din', 'Dinv30523' => 'din', 'Dinv35876' => 'din', 'Dinv36609' => 'din', 'Dinv37037' => 'din', 'Dinv41584' => 'din', 'Duzib106G0268' => 'dzi', 'Duzib128G0706' => 'dzi', 'Duzib150G0759' => 'dzi', 'Duzib168G2108' => 'dzi', 'Duzib187G0293' => 'dzi', 'ECA234G0831' => 'eca', 'ECA236G0736' => 'eca', 'ECA240G0084' => 'eca', 'EL10Ac2g02531' => 'bvu', 'EL10Ac8g18522' => 'bvu', 'EL10Ac8g19573' => 'bvu', 'EL10Ac9g21591' => 'bvu', 'Eucgr.A01700' => 'egr', 'Eucgr.C01068' => 'egr', 'Eucgr.K01548' => 'egr', 'FAN15G0311' => 'fan', 'FAN19G0712' => 'fan', 'FAN19G0786' => 'fan', 'FAN20G2175' => 'fan', 'FAN23G2212' => 'fan', 'FAN24G0293' => 'fan', 'FAN26G1169' => 'fan', 'FAN26G1470' => 'fan', 'FAN26G2075' => 'fan', 'FAN27G0132' => 'fan', 'FAN28G0104' => 'fan', 'FAN28G1375' => 'fan', 'FvH4_1g05240' => 'fve', 'FvH4_1g29630' => 'fve', 'FvH4_2g30220' => 'fve', 'Glyma.03G006000' => 'gma', 'Glyma.05G088000' => 'gma', 'Glyma.05G232200' => 'gma', 'Glyma.07G088500' => 'gma', 'Glyma.08G039600' => 'gma', 'Glyma.09G188300' => 'gma', 'Glyma.14G129900' => 'gma', 'Glyma.17G203600' => 'gma', 'Glyma.19G067400' => 'gma', 'Glyma.19G120051' => 'gma', 'Gohir.A05G011100' => 'ghi', 'Gohir.A05G021800' => 'ghi', 'Gohir.A06G048300' => 'ghi', 'Gohir.A06G060900' => 'ghi', 'Gohir.A08G240700' => 'ghi', 'Gohir.A09G083901' => 'ghi', 'Gohir.A11G224206' => 'ghi', 'Gohir.A11G300500' => 'ghi', 'Gohir.D05G011800' => 'ghi', 'Gohir.D05G023400' => 'ghi', 'Gohir.D06G048300' => 'ghi', 'Gohir.D06G059300' => 'ghi', 'Gohir.D08G261400' => 'ghi', 'Gohir.D09G083700' => 'ghi', 'Gohir.D11G237800' => 'ghi', 'Gohir.D11G315300' => 'ghi', 'Gorai.004G279500' => 'gra', 'Gorai.006G099600' => 'gra', 'Gorai.006G099700' => 'gra', 'Gorai.007G251300' => 'gra', 'Gorai.007G346500' => 'gra', 'Gorai.009G012100' => 'gra', 'Gorai.009G023500' => 'gra', 'Gorai.010G054100' => 'gra', 'Gorai.010G069100' => 'gra', 'GSVIVG01015419001' => 'vvi', 'GSVIVG01017129001' => 'vvi', 'GSVIVG01029915001' => 'vvi', 'GSVIVG01035737001' => 'vvi', 'HanXRQChr03g0061951' => 'han', 'HanXRQChr04g0125501' => 'han', 'HanXRQChr06g0178091' => 'han', 'HanXRQChr09g0239781' => 'han', 'HanXRQChr09g0239801' => 'han', 'HanXRQChr10g0317821' => 'han', 'Haze_20375' => 'cav', 'Haze_21635' => 'cav', 'Haze_25691' => 'cav', 'Hma1.2p1_0018F.1_g013230' => 'hma', 'Hma1.2p1_0165F.1_g073400' => 'hma', 'Hma1.2p1_0175F.1_g077322' => 'hma', 'Hma1.2p1_0175F.1_g077324' => 'hma', 'Hma1.2p1_1215F.1_g267620' => 'hma', 'HPP92_002910' => 'vpl', 'HPP92_002911' => 'vpl', 'HPP92_005546' => 'vpl', 'Hund09192' => 'sun', 'Hund25655' => 'sun', 'Hund26136' => 'sun', 'Lalb_Chr02g0157591' => 'lal', 'Lalb_Chr05g0222691' => 'lal', 'Lalb_Chr06g0174161' => 'lal', 'Lalb_Chr08g0243741' => 'lal', 'Lalb_Chr08g0243751' => 'lal', 'Lalb_Chr09g0331141' => 'lal', 'Lalb_Chr14g0371371' => 'lal', 'Lalb_Chr22g0352941' => 'lal', 'Lj2A416G33' => 'lonja', 'Lj2g0022086' => 'lja', 'Lj2g0023387' => 'lja', 'Lj4g0011940' => 'lja', 'Lj5g0013721' => 'lja', 'Lj7A646G40' => 'lonja', 'Lj7A646G41' => 'lonja', 'Lj7A711G47' => 'lonja', 'Lj7A711T50' => 'lonja', 'Lj8A609T42' => 'lonja', 'Lsat_1_v5_gn_1_125940' => 'lsa', 'Lsat_1_v5_gn_3_80100' => 'lsa', 'Lsat_1_v5_gn_5_1000' => 'lsa', 'Lsat_1_v5_gn_7_42361' => 'lsa', 'Lsat_1_v5_gn_8_83661' => 'lsa', 'Manes.03G067000' => 'mes', 'Manes.08G150600' => 'mes', 'Manes.09G135500' => 'mes', 'Manes.16G068700' => 'mes', 'Manes.16G070500' => 'mes', 'Mapoly0032s0108' => 'mpo', 'MBI01_g16636_MAGBIO' => 'mbi', 'MBI02_g07510_MAGBIO' => 'mbi', 'MBI04_g40088_MAGBIO' => 'mbi', 'MBI19_g30306_MAGBIO' => 'mbi', 'MBI19_g32310_MAGBIO' => 'mbi', 'MBI19_g40248_MAGBIO' => 'mbi', 'MCO11G774' => 'mco', 'MD02G1063100' => 'mdo', 'MD08G1135500' => 'mdo', 'MD12G1014100' => 'mdo', 'MD14G1011500' => 'mdo', 'MD15G1114500' => 'mdo', 'MD15G1188600' => 'mdo', 'Medtr1g010280' => 'mtr', 'Medtr4g025560' => 'mtr', 'Medtr6g027300' => 'mtr', 'Medtr6g086630' => 'mtr', 'Medtr8g103750' => 'mtr', 'MELO3C003662.2' => 'cme', 'MELO3C004547.2' => 'cme', 'MELO3C009707.2' => 'cme', 'Migut.A00267' => 'egut', 'Migut.J01581' => 'egut', 'Migut.K00184' => 'egut', 'Migut.K00462' => 'egut', 'Migut.L00406' => 'egut', 'MSTRG.10681' => 'ama', 'MSTRG.19757' => 'ama', 'MSTRG.6272' => 'ama', 'Nitab4.5_0000123g0070' => 'nta', 'Nitab4.5_0000125g0400' => 'nta', 'Nitab4.5_0001672g0150' => 'nta', 'Nitab4.5_0005047g0020' => 'nta', 'Nitab4.5_0007999g0030' => 'nta', 'Nitab4.5_0009945g0030' => 'nta', 'Nn2g11804' => 'nnu', 'Nn2g14730' => 'nnu', 'Nn8g39251' => 'nnu', 'Oeu018265.1' => 'oeu', 'Oeu023032.1' => 'oeu', 'Oeu027163.1' => 'oeu', 'Oeu027164.1' => 'oeu', 'Oeu044219.1' => 'oeu', 'Oeu045172.1' => 'oeu', 'Oeu048662.2' => 'oeu', 'Os01g0813900' => 'osa', 'Os02g0208900' => 'osa', 'Os03g0323500' => 'osa', 'Os05g0534800' => 'osa', 'Peaxi162Scf00003g05391' => 'pax', 'Peaxi162Scf00105g01225' => 'pax', 'Peaxi162Scf00546g00325' => 'pax', 'Peaxi162Scf00560g00513' => 'pax', 'PGR044G0999' => 'pgr', 'PGR142G2142' => 'pgr', 'PGR142G2361' => 'pgr', 'PGSC0003DMG400000322' => 'stu', 'PGSC0003DMG400007207' => 'stu', 'PGSC0003DMG400014483' => 'stu', 'Phvul.001G056000' => 'pvu', 'Phvul.002G314400' => 'pvu', 'Phvul.002G314500' => 'pvu', 'Phvul.004G052500' => 'pvu', 'Potri.006G246100' => 'ptr', 'Potri.013G068300' => 'ptr', 'Potri.018G035000' => 'ptr', 'Potri.018G076200' => 'ptr', 'Pp3c10_10670' => 'ppa', 'Pp3c14_22720' => 'ppa', 'Pp3c1_39920' => 'ppa', 'Pp3c1_70' => 'ppa', 'Pp3c2_28440' => 'ppa', 'PRCOL_00005201' => 'pco', 'Prupe.1G466000' => 'ppe', 'Prupe.7G026600' => 'ppe', 'Prupe.7G227900' => 'ppe', 'Psat1g039840' => 'psa', 'Psat1g088560' => 'psa', 'Psat6g031160' => 'psa', 'Psat7g014040' => 'psa', 'PSO063G5179' => 'pso', 'PSO210G5730' => 'pso', 'PSO210G6127' => 'pso', 'PSO541G0531' => 'pso', 'PSO675G2600' => 'pso', 'PSO782G3465' => 'pso', 'QL02p085888' => 'qlo', 'QL07p016355' => 'qlo', 'QL07p016401' => 'qlo', 'QL12p031169' => 'qlo', 'RcHm_v2.0_Chr2g0090971' => 'rch', 'RcHm_v2.0_Chr3g0495661' => 'rch', 'RcHm_v2.0_Chr6g0312661' => 'rch', 'Rhsim02G0186900' => 'rsi', 'Rhsim03G0045400' => 'rsi', 'Rhsim03G0244400' => 'rsi', 'Sabra06G0192600' => 'sbr', 'Sabra13G0059600' => 'sbr', 'Sabra18G0035800' => 'sbr', 'Sabra18G0064900' => 'sbr', 'SalBow1G0918' => 'sbo', 'SalBow1G5635' => 'sbo', 'SalBow1G7355' => 'sbo', 'SalBow2G0895' => 'sbo', 'SalBow4G3273' => 'sbo', 'SalBow6G5163' => 'sbo', 'Sc08g0007330' => 'sci', 'Sc18g0001100' => 'sci', 'Sc23g0005800' => 'sci', 'Sc23g0005810' => 'sci', 'Sed0000587' => 'sed', 'Sed0000855' => 'sed', 'Sed0021010' => 'sed', 'Sed0023292' => 'sed', 'SEGI_01593' => 'sgi', 'SEGI_02777' => 'sgi', 'SEGI_32372' => 'sgi', 'SGA_v2.0_scaffold106G30577' => 'sas', 'SGA_v2.0_scaffold109G31040' => 'sas', 'SGA_v2.0_scaffold240G44154' => 'sas', 'SGA_v2.0_scaffold27G11504' => 'sas', 'SHI02629' => 'shi', 'SHI14842' => 'shi', 'SMO351G0452' => 'smo', 'Solyc08g067930.4' => 'sly', 'Solyc10g076990.3' => 'sly', 'Solyc12g006990.2' => 'sly', 'Sopen08g021840' => 'spe', 'Sopen10g028670' => 'spe', 'Sopen12g002950' => 'spe', 'Sp1g07340' => 'spa', 'Sp7g10920' => 'spa', 'Sp7g30400' => 'spa', 'TAR383G0599' => 'tar', 'TAR586G0001' => 'tar', 'TAR586G0002' => 'tar', 'TAR624G0085' => 'tar', 'TAR636G1076' => 'tar', 'TAR636G2605' => 'tar', 'THA.LOC104804514' => 'tha', 'THA.LOC104808754' => 'tha', 'THA.LOC104821335' => 'tha', 'THA.LOC104823770' => 'tha', 'Thecc.05G237700' => 'tca', 'Thecc.06G084200' => 'tca', 'Thecc.09G113500' => 'tca', 'Thecc.09G143600' => 'tca', 'Thhalv10007026m.g' => 'esa', 'Thhalv10024655m.g' => 'esa', 'Thhalv10024713m.g' => 'esa', 'TPR.G21675' => 'tpr', 'TPR.G33939' => 'tpr', 'TPR.G38992' => 'tpr', 'TWI32G0814' => 'twi', 'TWI32G1313' => 'twi', 'TWI34G1393' => 'twi', 'TWI34G1746' => 'twi', 'TWI60G0413' => 'twi', 'TWI63G1217' => 'twi', 'unitig_0.g2729' => 'ugi', 'unitig_37.g12222' => 'ugi', 'vmacro06202' => 'vma', 'vmacro07632' => 'vma', 'vmacro11110' => 'vma', 'vmacro20662' => 'vma', 'VMungo0251G3166' => 'vmu', 'VMungo0251G3488' => 'vmu', 'VMungo0331G1876' => 'vmu', 'VMungo0464G1186' => 'vmu', 'VMungo0647G2223' => 'vmu', 'Zm00001eb015390' => 'zma', 'Zm00001eb087140' => 'zma', 'Zm00001eb091340' => 'zma', 'Zm00001eb114590' => 'zma', 'Zm00001eb149950' => 'zma', 'Zm00001eb205450' => 'zma', 'Zm00001eb240400' => 'zma', 'Zm00001eb293940' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001437' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001437' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001437' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001437' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151