Gene: AT4G04885
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G04885
- Transcript Identifier AT4G04885.1
- Gene Type Coding gene
- Location Chr4 : 2472083-2475417 : positive
Gene Family Information
- ID HOM05D001701
- #Genes/#Species 381/98
- Phylogenetic origin
- ID ORTHO05D001628
- #Genes/#Species 379/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G04885.1
- symbol PCFS4
- uniprot Q0WPF2
Descriptions
- Description PCF11P-similar protein 4
- Computational description PCF11P-similar protein 4 (PCFS4); FUNCTIONS IN: zinc ion binding; INVOLVED IN: positive regulation of flower development, mRNA polyadenylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: shoot apical meristem, sepal, gynoecium, stamen, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), Zinc finger, C2H2-type (InterPro:IPR007087), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: Pre-mRNA cleavage complex II (TAIR:AT1G66500.1); Has 656 Blast hits to 406 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 208; Fungi - 279; Plants - 120; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006379 | IEA | Gene Ontology | mRNA cleavage | |
| GO:0006379 | IEA | InterPro | mRNA cleavage | |
| GO:0006378 | IEA | GOA Database | mRNA polyadenylation | |
| GO:0006378 | IMP IBA | Gene Ontology | mRNA polyadenylation | 1 2 |
| GO:0006378 | IEA | InterPro | mRNA polyadenylation | |
| GO:0006369 | IEA | GOA Database | termination of RNA polymerase II transcription | |
| GO:0006369 | IBA | Gene Ontology | termination of RNA polymerase II transcription | 2 |
| GO:0006369 | IEA | InterPro | termination of RNA polymerase II transcription | |
| GO:0009908 | IEA | GOA Database | flower development | |
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0006397 | IMP | Gene Ontology | mRNA processing | 3 |
| GO:0009911 | IMP | Gene Ontology | positive regulation of flower development | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | IEA | GOA Database | mRNA binding | |
| GO:0003729 | IBA | Gene Ontology | mRNA binding | 2 |
| GO:0003729 | IEA | InterPro | mRNA binding | |
| GO:0000993 | IEA | GOA Database | RNA polymerase II complex binding | |
| GO:0000993 | IBA | Gene Ontology | RNA polymerase II complex binding | 2 |
| GO:0000993 | IEA | InterPro | RNA polymerase II complex binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA IBA | Gene Ontology | cytoplasm | 1 2 |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 1 |
| GO:0005849 | IBA | Gene Ontology | mRNA cleavage factor complex | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.3.1.5.2 | RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Factor II (CF-IIm) complex.component Pcf11 |