Gene: AT4G04890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G04890
  • Transcript Identifier AT4G04890.1
  • Gene Type Coding gene
  • Location Chr4 : 2476970-2480090 : negative

Gene Family Information

  • ID HOM05D000226
  • #Genes/#Species 1818/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G04890.1
  • symbol PDF2
  • uniprot Q93V99

Descriptions

  • Description protodermal factor 2
  • Computational description protodermal factor 2 (PDF2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: epidermal cell differentiation, regulation of transcription, DNA-dependent, cotyledon development; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0030154
IEA
GOA Databasecell differentiation
GO:0006357
IEA
GOA Databaseregulation of transcription by RNA polymerase II
GO:2000033
IEP
Gene Ontologyregulation of seed dormancy process1
GO:0010029
IEP
Gene Ontologyregulation of seed germination1
GO:0009845
IMP
Gene Ontologyseed germination1
GO:0048497
IGI
Gene Ontologymaintenance of floral organ identity2
GO:0048825
IGI
Gene Ontologycotyledon development3
GO:0009913
IMP
Gene Ontologyepidermal cell differentiation4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008289
IEA
Gene Ontologylipid binding
GO:0008289
IEA
InterProlipid binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IDA, IPI
Gene OntologyDNA binding1 4
GO:0003677
IEA
InterProDNA binding
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding5
GO:0000981
IEA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus1
GO:0005737
ISM
Gene Ontologycytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001356 Homeobox domain
IPR002913 START domain
IPR042160 Homeobox-leucine zipper protein GLABRA2/ANL2/PDF2/ATML1-like
IPR023393 START-like domain superfamily
IPR009057 Homeobox-like domain superfamily
Mapman id Description
15.5.3.3 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP IV)