Gene: AT4G00380

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G00380
  • Transcript Identifier AT4G00380.1
  • Gene Type Coding gene
  • Location Chr4 : 167959-170448 : positive

Gene Family Information

  • ID HOM05D000537
  • #Genes/#Species 1018/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G00380.1
  • symbol FDM2
  • Alias IDP2,IDN2 PARALOG 2,INDL2,INVOLVED IN DE NOVO 2 (IDN2) - LIKE 2
  • full_name factor of DNA methylation 2
  • uniprot F4JH53

Descriptions

  • Description XH/XS domain-containing protein
  • Computational description XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT1G15910.1); Has 52398 Blast hits to 32322 proteins in 2074 species: Archae - 615; Bacteria - 6626; Metazoa - 25839; Fungi - 3724; Plants - 1961; Viruses - 202; Other Eukaryotes - 13431 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080188
IGI
Gene Ontologygene silencing by RNA-directed DNA methylation1
GO:0010569
IEP
Gene Ontologyregulation of double-strand break repair via homologous recombination2
GO:0031047
IEA
GOA Databasegene silencing by RNA
GO:0031047
IEA
InterProgene silencing by RNA

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT1G15910
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT1G15910
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G15910
GO:0003725
ISO
PLAZA Integrative Orthologydouble-stranded RNA binding AT1G15910
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT1G15910

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005886
ISM
Gene Ontologyplasma membrane
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G15910

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038588 XS domain superfamily
IPR005380 XS domain
IPR005381 Zinc finger-XS domain
IPR005379 Uncharacterised domain XH
Mapman id Description
12.5.1.4 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.regulatory protein (IDN/IDP)