Gene: AT3G60040

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G60040
  • Transcript Identifier AT3G60040.2
  • Gene Type Coding gene
  • Location Chr3 : 22176707-22179728 : negative

Gene Family Information

  • ID HOM05D000689
  • #Genes/#Species 831/16
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G60040.2
  • uniprot Q8GWI2

Descriptions

  • Description F-box family protein
  • Computational description F-box family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Pentatricopeptide repeat (InterPro:IPR002885), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G06630.2); Has 42185 Blast hits to 11085 proteins in 246 species: Archae - 5; Bacteria - 27; Metazoa - 105; Fungi - 161; Plants - 41065; Viruses - 0; Other Eukaryotes - 822 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009901
ISO
PLAZA Tree-based Orthologyanther dehiscence AT3G62440
GO:0016036
ISO
PLAZA Tree-based Orthologycellular response to phosphate starvation AT3G42770
GO:0006952
ISO
PLAZA Tree-based Orthologydefense response AT3G03040
GO:0000209
ISO
PLAZA Tree-based Orthologyprotein polyubiquitination AT3G42770

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061630
ISO
PLAZA Tree-based Orthologyubiquitin protein ligase activity AT3G42770
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
IEA
InterProprotein binding
GO:0004523
IEA
Gene OntologyRNA-DNA hybrid ribonuclease activity
GO:0004523
IEA
InterProRNA-DNA hybrid ribonuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031225
ISO
PLAZA Tree-based Orthologyanchored component of membrane AT3G58890
GO:0005773
ISO
PLAZA Tree-based Orthologyvacuole AT5G25860
GO:0005783
ISO
PLAZA Tree-based Orthologyendoplasmic reticulum AT1G47920
GO:0005737
ISO
PLAZA Tree-based Orthologycytoplasm AT4G27050
GO:0005634
ISO
PLAZA Tree-based Orthologynucleus AT4G27050
GO:0000325
HDA
Gene Ontologyplant-type vacuole1
GO:0005739
ISM
Gene Ontologymitochondrion

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002156 Ribonuclease H domain
IPR036047 F-box-like domain superfamily
IPR013101 Leucine-rich repeat 2
IPR036397 Ribonuclease H superfamily
IPR032675 Leucine-rich repeat domain superfamily
IPR001810 F-box domain
IPR012337 Ribonuclease H-like superfamily
Mapman id Description
35.1 not assigned.annotated