Gene: AT1G47920
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G47920
- Transcript Identifier AT1G47920.1
- Gene Type Coding gene
- Location Chr1 : 17661095-17662394 : positive
Gene Family Information
- ID HOM05D000689
- #Genes/#Species 831/16
- Phylogenetic origin
- ID ORTHO05D000015
- #Genes/#Species 4708/79
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT1G47920.1
- uniprot F4HV53
Descriptions
- Description RNI-like superfamily protein
- Computational description RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G48400.1); Has 444 Blast hits to 433 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 444; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008150 | ND | Gene Ontology | biological_process | |
| GO:0000209 | ISO | PLAZA Tree-based Orthology | protein polyubiquitination | AT3G42770 |
| GO:0006952 | ISO | PLAZA Tree-based Orthology | defense response | AT3G03040 |
| GO:0016036 | ISO | PLAZA Tree-based Orthology | cellular response to phosphate starvation | AT3G42770 |
| GO:0009901 | ISO | PLAZA Tree-based Orthology | anther dehiscence | AT3G62440 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003674 | ND | Gene Ontology | molecular_function | |
| GO:0061630 | ISO | PLAZA Tree-based Orthology | ubiquitin protein ligase activity | AT3G42770 |
| GO:0005515 | ISO | PLAZA Tree-based Orthology | protein binding | AT3G58930 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005783 | IDA | Gene Ontology | endoplasmic reticulum | 1 |
| GO:0005634 | ISO | PLAZA Tree-based Orthology | nucleus | AT4G27050 |
| GO:0005737 | ISO | PLAZA Tree-based Orthology | cytoplasm | AT4G27050 |
| GO:0005773 | ISO | PLAZA Tree-based Orthology | vacuole | AT5G25860 |
| GO:0031225 | ISO | PLAZA Tree-based Orthology | anchored component of membrane | AT3G58890 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR006566 | FBD domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |