Gene: AT3G56900

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G56900
  • Transcript Identifier AT3G56900.1
  • Gene Type Coding gene
  • Location Chr3 : 21066330-21069343 : positive

Gene Family Information

  • ID HOM05D006173
  • #Genes/#Species 128/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G56900.1
  • uniprot Q8GWR1

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 4015 Blast hits to 2516 proteins in 309 species: Archae - 52; Bacteria - 1176; Metazoa - 1329; Fungi - 813; Plants - 363; Viruses - 0; Other Eukaryotes - 282 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006913
IBA
Gene Ontologynucleocytoplasmic transport1
GO:0051028
IEA
GOA DatabasemRNA transport
GO:0015031
IEA
GOA Databaseprotein transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005635
IEA
GOA Databasenuclear envelope
GO:0005635
IDA
Gene Ontologynuclear envelope2
GO:0005783
IDA
GOA Databaseendoplasmic reticulum
GO:0005783
HDA
Gene Ontologyendoplasmic reticulum3
GO:0005643
IEA
GOA Databasenuclear pore
GO:0005643
IBA
Gene Ontologynuclear pore1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR045139 Aladin
Mapman id Description
23.5.1.1.1.8 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (ALADIN)