Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 4.4e-253 877.5 448 100.0
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 1.3e-247 859.4 448 98.0
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 2.3e-241 838.6 448 95.3
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 4.3e-240 834.3 448 94.4
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 3.5e-234 814.7 448 92.6
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 7.4e-232 807.0 448 88.8
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 3.5e-226 788.1 448 85.3
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 3.5e-226 788.1 448 85.3
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 1.8e-225 785.8 448 85.0
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 5.7e-224 780.8 448 85.0
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 7.6e-221 770.4 442 85.3
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 7.6e-221 770.4 444 85.1
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 2.6e-213 745.3 447 85.7
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 3.3e-208 728.4 522 71.5
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 2.9e-188 662.1 448 70.8
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 5.0e-188 661.4 453 72.0
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 1.8e-185 652.9 456 73.0
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 1.8e-185 652.9 443 71.6
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 8.8e-185 650.6 450 72.4
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 1.2e-184 650.2 455 72.7
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 2.0e-184 649.4 455 73.0
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 3.4e-184 648.7 454 72.7
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 1.7e-183 646.4 451 69.2
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 4.8e-183 644.8 452 69.2
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 4.1e-182 641.7 443 70.4
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 5.4e-182 641.3 449 72.6
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 2.7e-181 639.0 448 72.8
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 2.7e-181 639.0 443 70.0
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 5.9e-181 637.9 443 70.0
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 2.3e-177 625.9 443 69.1
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 8.9e-177 624.0 451 68.5
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 4.9e-175 618.2 467 65.3
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 8.3e-175 617.5 453 66.4
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 1.4e-174 616.7 453 68.2
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 7.0e-174 614.4 453 70.9
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 2.0e-173 612.8 461 68.5
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 2.7e-173 612.5 453 70.2
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 1.0e-172 610.5 451 66.1
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 1.7e-172 609.8 475 64.6
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 2.9e-172 609.0 449 66.6
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 2.9e-172 609.0 497 63.0
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 1.5e-171 606.7 442 67.2
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 2.5e-171 605.9 448 69.6
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 6.8e-169 597.8 442 67.2
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 1.2e-168 597.0 442 69.0
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 1.2e-168 597.0 458 64.4
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 1.5e-168 596.7 451 65.4
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 3.7e-167 592.0 466 63.1
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 3.7e-167 592.0 443 69.5
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 4.9e-167 591.7 451 67.6
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 5.4e-166 588.2 483 61.1
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 7.0e-166 587.8 453 65.1
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 7.8e-165 584.3 451 63.6
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 3.9e-164 582.0 449 67.0
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 8.6e-164 580.9 449 66.8
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 8.0e-162 574.3 493 60.6
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 5.2e-161 571.6 470 61.9
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.1e-157 559.7 459 62.3
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 7.8e-157 557.8 447 63.8
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 1.1e-155 553.9 414 66.7
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 5.2e-153 545.0 460 60.7
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 5.2e-153 545.0 448 60.7
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 5.2e-153 545.0 445 60.4
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 2.0e-152 543.1 448 63.4
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 7.5e-152 541.2 447 59.7
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 6.4e-151 538.1 431 65.4
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 8.3e-151 537.7 428 62.9
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 5.1e-148 528.5 552 52.5
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.6e-146 523.5 435 62.8
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 8.1e-146 521.2 469 56.1
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 3.1e-145 519.2 542 52.4
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 3.5e-141 505.8 469 58.0
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 1.7e-140 503.4 445 57.8
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 3.0e-140 502.7 400 65.8
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 1.8e-137 493.4 429 58.3
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 1.3e-135 487.3 453 56.7
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 7.6e-128 461.5 423 57.4
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 2.2e-127 459.9 487 53.4
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 1.1e-126 457.6 339 65.2
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 1.4e-126 457.2 470 52.1
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 2.1e-122 443.4 352 65.1
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 1.8e-121 440.3 480 47.7
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.6e-117 427.2 407 56.3
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 6.0e-117 425.2 462 50.9
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.0e-108 397.9 454 46.0
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.3e-108 397.5 454 46.0
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 1.1e-107 394.4 461 43.0
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 1.0e-103 381.3 390 54.4
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 2.2e-103 380.2 408 51.0
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 1.4e-102 377.5 427 50.1
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 2.2e-95 353.6 334 58.4
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 4.2e-94 349.4 232 73.3
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 1.6e-93 347.4 302 59.9
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 8.0e-85 318.5 202 73.8
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 2.3e-84 317.0 217 69.1
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 7.4e-83 312.0 279 56.3
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 7.4e-83 312.0 202 74.3
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 3.7e-82 309.7 173 83.8
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.8e-79 299.7 264 58.0
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 5.0e-79 299.3 202 70.8
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 7.5e-75 285.4 230 57.4
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 3.5e-72 276.6 226 59.7
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.3e-71 274.6 170 72.4
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 9.4e-70 268.5 234 58.1
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 1.2e-69 268.1 262 55.7
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 1.2e-69 268.1 234 58.1
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 9.8e-67 258.5 244 54.5
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 3.7e-66 256.5 153 78.4
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 5.0e-63 246.1 234 51.7
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 5.0e-63 246.1 137 80.3
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 9.2e-57 225.3 207 55.6
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 1.0e-55 221.9 184 60.3
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 2.3e-55 220.7 209 53.6
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 4.0e-52 209.9 171 60.8
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 7.5e-51 205.7 181 56.9
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 1.0e-47 195.3 189 55.0
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 3.7e-42 176.8 340 32.6
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 3.0e-39 167.2 97 79.4
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 4.7e-37 159.8 272 40.4
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 6.2e-37 159.5 87 77.0
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 1.3e-31 141.7 280 31.4
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.4e-28 131.0 74 77.0
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 5.4e-25 119.8 70 72.9
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 1.3e-23 115.2 220 35.9
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 1.5e-22 111.7 239 35.1
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 3.0e-15 87.4 59 69.5
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 1.3e-13 82.0 49 75.5
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 1.4e-12 78.6 350 27.7
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 5.8e-11 73.2 94 45.7
Psat7g244360 Pisum sativum HOM05D000821 ORTHO05D000931 7.4e-06 56.2 43 58.1


User provided reference genes

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