Gene: AT3G55540

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G55540
  • Transcript Identifier AT3G55540.1
  • Gene Type Coding gene
  • Location Chr3 : 20598218-20599614 : positive

Gene Family Information

  • ID HOM05D000622
  • #Genes/#Species 916/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G55540.1
  • uniprot Q9M2S5

Descriptions

  • Description nuclear transport factor 2 (NTF2) family protein
  • Computational description nuclear transport factor 2 (NTF2) family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: transport, protein import into nucleus; LOCATED IN: nucleus, intracellular; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT1G69250.1); Has 278 Blast hits to 202 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 22; Plants - 247; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015031
ISS
Gene Ontologyprotein transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IBA
Gene OntologymRNA binding1
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
ISO
PLAZA Homology (enrichment)nucleic acid binding HOM05D000622

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005829
IBA
Gene Ontologycytosol1
GO:1990904
IBA
Gene Ontologyribonucleoprotein complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002075 Nuclear transport factor 2
IPR039539 Ras GTPase-activating protein-binding protein
IPR032710 NTF2-like domain superfamily
IPR018222 Nuclear transport factor 2, eukaryote
Mapman id Description
16.8.1 RNA processing.mRNA sequestration.mRNA endoribonuclease (G3BP)