Gene: AT3G55480

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G55480
  • Transcript Identifier AT3G55480.1
  • Gene Type Coding gene
  • Location Chr3 : 20566372-20570629 : negative

Gene Family Information

  • ID HOM05D004573
  • #Genes/#Species 158/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G55480.1
  • symbol PAT2
  • Alias AP-3 beta,beta-subunit of adaptor protein complex 3,WAT1,WEAK ACID TOLERANT 1
  • full_name protein affected traf%26#64257%3Bcking 2
  • uniprot Q9M2T1

Descriptions

  • Description protein affected trafficking 2
  • Computational description protein affected trafficking 2 (PAT2); FUNCTIONS IN: binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G11380.1); Has 2700 Blast hits to 1765 proteins in 249 species: Archae - 0; Bacteria - 810; Metazoa - 816; Fungi - 546; Plants - 173; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006886
IEA
Gene Ontologyintracellular protein transport
GO:0006886
IEA
InterProintracellular protein transport
GO:0016192
IBA
IEA
GOA Databasevesicle-mediated transport
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0015031
IEA
GOA Databaseprotein transport
GO:0051453
IMP
Gene Ontologyregulation of intracellular pH1
GO:0006896
IMP
Gene OntologyGolgi to vacuole transport1
GO:0080171
IMP
Gene Ontologylytic vacuole organization2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031410
IEA
GOA Databasecytoplasmic vesicle
GO:0030117
IEA
GOA Databasemembrane coat
GO:0030117
IEA
InterPromembrane coat
GO:0030123
IEA
Gene OntologyAP-3 adaptor complex
GO:0030123
IEA
InterProAP-3 adaptor complex
GO:0016020
IEA
GOA Databasemembrane
GO:0005634
ISM
Gene Ontologynucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0030659
IEA
GOA Databasecytoplasmic vesicle membrane
GO:0005794
IEA
GOA DatabaseGolgi apparatus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR026740 AP-3 complex subunit beta
IPR011989 Armadillo-like helical
IPR029390 AP-3 complex subunit beta, C-terminal domain
IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal
IPR016024 Armadillo-type fold
IPR026739 AP complex subunit beta
Mapman id Description
22.3.1.4.2 Vesicle trafficking.post-Golgi trafficking.clathrin coated vesicle (CCV) machinery.AP-3 cargo adaptor complex.large subunit beta (AP3B)