Gene: AT3G55120

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G55120
  • Transcript Identifier AT3G55120.1
  • Gene Type Coding gene
  • Location Chr3 : 20430248-20431415 : negative

Gene Family Information

  • ID HOM05D003362
  • #Genes/#Species 204/91
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G55120.1
  • symbol TT5
  • Alias A11,AtCHI,CFI,CHALCONE FLAVANONE ISOMERASE,CHI,chalcone isomerase
  • full_name TRANSPARENT TESTA 5
  • uniprot P41088

Descriptions

  • Description Chalcone-flavanone isomerase family protein
  • Computational description TRANSPARENT TESTA 5 (TT5); FUNCTIONS IN: chalcone isomerase activity; INVOLVED IN: response to UV, response to UV-B, response to karrikin, response to sucrose stimulus, flavonoid biosynthetic process; LOCATED IN: plant-type vacuole membrane, endoplasmic reticulum, extrinsic to endoplasmic reticulum membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66230.2); Has 391 Blast hits to 390 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 390; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009813
IMP
IEA
Gene Ontologyflavonoid biosynthetic process1
GO:0009813
IEA
InterProflavonoid biosynthetic process
GO:0080167
IEP
GOA Databaseresponse to karrikin
GO:0009411
IMP
Gene Ontologyresponse to UV2
GO:0009733
IEP
Gene Ontologyresponse to auxin3
GO:0010224
IMP
Gene Ontologyresponse to UV-B4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045430
IMP
IEA
Gene Ontologychalcone isomerase activity1
GO:0045430
IEA
InterProchalcone isomerase activity
GO:0016872
IEA
GOA Databaseintramolecular lyase activity
GO:0016872
IEA
InterProintramolecular lyase activity
GO:0016853
IEA
GOA Databaseisomerase activity
GO:0005515
IPI
Gene Ontologyprotein binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
Gene Ontologynucleus6
GO:0005829
HDA
Gene Ontologycytosol7
GO:0009507
HDA
ISM
Gene Ontologychloroplast8
GO:0042406
IDA
Gene Ontologyextrinsic component of endoplasmic reticulum membrane9
GO:0009705
IDA
Gene Ontologyplant-type vacuole membrane9
GO:0005783
IDA
Gene Ontologyendoplasmic reticulum9

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016087 Chalcone isomerase
IPR036298 Chalcone isomerase superfamily
IPR016089 Chalcone isomerase, orthogonal bundle domain superfamily
IPR016088 Chalcone isomerase, 3-layer sandwich
IPR044164 Chalcone--flavonone isomerase
Mapman id Description
9.2.2.3.1 Secondary metabolism.phenolics.flavonoid biosynthesis.flavanones.chalcone isomerase