Gene: AT3G54990
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G54990
- Transcript Identifier AT3G54990.1
- Gene Type Coding gene
- Location Chr3 : 20373718-20376522 : negative
Gene Family Information
- ID HOM05D000138
- #Genes/#Species 2624/100
- Phylogenetic origin
- ID ORTHO05D000078
- #Genes/#Species 2400/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G54990.1
- symbol SMZ
- full_name SCHLAFMUTZE
- uniprot Q6PV68
Descriptions
- Description Integrase-type DNA-binding superfamily protein
- Computational description SCHLAFMUTZE (SMZ); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G39250.1); Has 4731 Blast hits to 4226 proteins in 234 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 4627; Viruses - 15; Other Eukaryotes - 57 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | TAS, IEA | Gene Ontology | regulation of transcription, DNA-templated | 1 |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0009873 | IEA | GOA Database | ethylene-activated signaling pathway | |
| GO:0009658 | IMP | Gene Ontology | chloroplast organization | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | IEA | GOA Database | DNA-binding transcription factor activity | |
| GO:0003700 | ISS TAS | Gene Ontology | DNA-binding transcription factor activity | 3 4 |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | TAS | Gene Ontology | DNA binding | 1 |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0000976 | IPI | Gene Ontology | transcription cis-regulatory region binding | 5 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM TAS, IC | Gene Ontology | nucleus | 3 6 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.7.3 | RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (AP2) |