Gene: AT3G54590
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G54590
- Transcript Identifier AT3G54590.1
- Gene Type Coding gene
- Location Chr3 : 20206223-20208472 : positive
Gene Family Information
- ID HOM05D009529
- #Genes/#Species 29/11
- Phylogenetic origin
- ID ORTHO05D011424
- #Genes/#Species 33/12
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT3G54590.1
- symbol HRGP1
- Alias ATHRGP1,hydroxyproline-rich glycoprotein
- uniprot Q9M1G9
Descriptions
- Description hydroxyproline-rich glycoprotein
- Computational description hydroxyproline-rich glycoprotein (HRGP1); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT3G54580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009664 | IEA | Gene Ontology | plant-type cell wall organization | |
| GO:0009664 | IEA | InterPro | plant-type cell wall organization | |
| GO:0071555 | IEA | GOA Database | cell wall organization |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005199 | IEA | Gene Ontology | structural constituent of cell wall | |
| GO:0005199 | IEA | InterPro | structural constituent of cell wall |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009530 | IEA | GOA Database | primary cell wall | |
| GO:0005618 | IEA | GOA Database | cell wall | |
| GO:0005576 | IEA | GOA Database | extracellular region |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR006706 | Extensin domain |
| Mapman id | Description |
|---|---|
| 21.4.1.3.1 | Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.extensin activities.classical extensin |