Gene: AT3G54580

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G54580
  • Transcript Identifier AT3G54580.1
  • Gene Type Coding gene
  • Location Chr3 : 20200927-20203800 : negative

Gene Family Information

Gene Duplication Information

Labels

Identifiers

  • tid AT3G54580.1
  • uniprot F4JCZ1

Descriptions

  • Description Proline-rich extensin-like family protein
  • Computational description Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, root, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT3G28550.1); Has 478331 Blast hits to 51256 proteins in 1906 species: Archae - 1077; Bacteria - 77248; Metazoa - 176231; Fungi - 77872; Plants - 71303; Viruses - 12471; Other Eukaryotes - 62129 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009664
IEA
Gene Ontologyplant-type cell wall organization
GO:0009664
IEA
InterProplant-type cell wall organization

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005199
IEA
Gene Ontologystructural constituent of cell wall
GO:0005199
IEA
InterProstructural constituent of cell wall

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005575
ND
Gene Ontologycellular_component

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006706 Extensin domain
Mapman id Description
21.4.1.3.1 Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.extensin activities.classical extensin