Gene: AT3G47460

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G47460
  • Transcript Identifier AT3G47460.2
  • Gene Type Coding gene
  • Location Chr3 : 17486765-17493178 : positive

Gene Family Information

  • ID HOM05D002696
  • #Genes/#Species 255/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G47460.2
  • symbol ATSMC2
  • uniprot Q9SN90

Descriptions

  • Description Structural maintenance of chromosomes (SMC) family protein
  • Computational description ATSMC2; FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: chromosome; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 2 (TAIR:AT5G62410.1); Has 105566 Blast hits to 56901 proteins in 3202 species: Archae - 1526; Bacteria - 19204; Metazoa - 44960; Fungi - 8478; Plants - 5252; Viruses - 457; Other Eukaryotes - 25689 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051276
IEA
GOA Databasechromosome organization
GO:0051276
IEA
InterProchromosome organization
GO:0030261
IEA
GOA Databasechromosome condensation
GO:0051321
IEA
GOA Databasemeiotic cell cycle
GO:0051301
IEA
GOA Databasecell division
GO:0007049
IEA
GOA Databasecell cycle
GO:0007076
IBA
Gene Ontologymitotic chromosome condensation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005515
IEA
InterProprotein binding
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005524
IEA
Gene OntologyATP binding
GO:0005524
IEA
InterProATP binding
GO:0003682
IBA
Gene Ontologychromatin binding1
GO:0022857
ISS
Gene Ontologytransmembrane transporter activity2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
Gene Ontologychromosome
GO:0005694
IEA
InterProchromosome
GO:0005634
IEA
GOA Databasenucleus
GO:0000785
IBA
Gene Ontologychromatin1
GO:0000796
IBA
Gene Ontologycondensin complex1
GO:0000793
IBA
Gene Ontologycondensed chromosome1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027120 Smc2, ATP-binding cassette domain
IPR010935 SMCs flexible hinge
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR024704 Structural maintenance of chromosomes protein
IPR003395 RecF/RecN/SMC, N-terminal
IPR036277 SMCs flexible hinge superfamily
Mapman id Description
13.3.1.1.2 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I/II complex.component CAP-E2/SMC2