Gene: AT3G47390

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G47390
  • Transcript Identifier AT3G47390.2
  • Gene Type Coding gene
  • Location Chr3 : 17462094-17464655 : positive

Gene Family Information

  • ID HOM05D004789
  • #Genes/#Species 154/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G47390.2
  • symbol PHS1
  • Alias PyrR,pyrimidine reductase
  • full_name PHOTOSENSITIVE 1
  • uniprot Q9STY4

Descriptions

  • Description cytidine/deoxycytidylate deaminase family protein
  • Computational description PHOTOSENSITIVE 1 (PHS1); CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02464 (InterPro:IPR012816), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin-specific deaminase, C-terminal (InterPro:IPR011549), Bacterial bifunctional deaminase-reductase, C-terminal (InterPro:IPR002734), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G20960.1); Has 7611 Blast hits to 7611 proteins in 2242 species: Archae - 202; Bacteria - 4931; Metazoa - 21; Fungi - 157; Plants - 91; Viruses - 17; Other Eukaryotes - 2192 (source: NCBI BLink).
  • Computational description PHOTOSENSITIVE 1 (PHS1); CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02464 (InterPro:IPR012816), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin-specific deaminase, C-terminal (InterPro:IPR011549), Bacterial bifunctional deaminase-reductase, C-terminal (InterPro:IPR002734), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G20960.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009231
IEA
Gene Ontologyriboflavin biosynthetic process
GO:0009231
IEA
InterProriboflavin biosynthetic process
GO:0008152
IEA
GOA Databasemetabolic process
GO:1901135
IDA
Gene Ontologycarbohydrate derivative metabolic process1
GO:0046443
IMP
Gene OntologyFAD metabolic process2
GO:0009658
IMP
Gene Ontologychloroplast organization2
GO:0009644
IMP
Gene Ontologyresponse to high light intensity2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008835
IBA
IEA
Gene Ontologydiaminohydroxyphosphoribosylaminopyrimidine deaminase activity3
GO:0008835
IEA
InterProdiaminohydroxyphosphoribosylaminopyrimidine deaminase activity
GO:0004159
ISO
PLAZA Integrative Orthologydihydrouracil dehydrogenase (NAD+) activity Zm00001eb240960
GO:0050661
IEA
Gene OntologyNADP binding
GO:0050661
IEA
InterProNADP binding
GO:0008703
IDA
NAS, IEA
Gene Ontology5-amino-6-(5-phosphoribosylamino)uracil reductase activity2 4
GO:0008703
IEA
InterPro5-amino-6-(5-phosphoribosylamino)uracil reductase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0016799
IDA
Gene Ontologyhydrolase activity, hydrolyzing N-glycosyl compounds1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA
ISM
Gene Ontologychloroplast4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002125 Cytidine and deoxycytidylate deaminase domain
IPR016193 Cytidine deaminase-like
IPR012816 NADAR
IPR024072 Dihydrofolate reductase-like domain superfamily
IPR004794 Riboflavin biosynthesis protein RibD
IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal
IPR011549 Riboflavin-specific deaminase, C-terminal
IPR037238 YbiA-like superfamily
Mapman id Description
7.10.5 Coenzyme metabolism.FMN/FAD biosynthesis.pyrimidine reductase (PyrR)