Gene: AT3G23620

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G23620
  • Transcript Identifier AT3G23620.1
  • Gene Type Coding gene
  • Location Chr3 : 8480147-8481873 : positive

Gene Family Information

  • ID HOM05D005183
  • #Genes/#Species 145/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G23620.1
  • uniprot Q9LUG5

Descriptions

  • Description Ribosomal RNA processing Brix domain protein
  • Computational description Ribosomal RNA processing Brix domain protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 435 Blast hits to 425 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 138; Plants - 54; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000470
IEA
GOA Databasematuration of LSU-rRNA
GO:0000470
IEA
InterPromaturation of LSU-rRNA
GO:0000027
IEA
GOA Databaseribosomal large subunit assembly
GO:0000027
IBA
Gene Ontologyribosomal large subunit assembly1
GO:0000027
IEA
InterProribosomal large subunit assembly
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006364
IEA
InterProrRNA processing
GO:0000463
IBA
Gene Ontologymaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1
GO:0032774
IMP
Gene OntologyRNA biosynthetic process2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019843
IEA
GOA DatabaserRNA binding
GO:0019843
IDA
IBA
Gene OntologyrRNA binding1 2
GO:0019843
IEA
InterProrRNA binding
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IDA, HDA
IBA
Gene Ontologynucleolus1 2 3
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005829
RCA
Gene Ontologycytosol4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007109 Brix domain
IPR039770 Ribosome biogenesis protein Rpf2
Mapman id Description
17.1.2.2.1.11.1 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.pre-60S ribosomal subunit nuclear assembly.ARPF2-ARRS1 assembly complex.component ARPF2