Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 2.4e-173 612.1 315 100.0
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 7.9e-164 580.5 315 94.6
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 3.4e-151 538.5 318 87.4
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 7.7e-151 537.3 299 90.6
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 2.7e-148 528.9 315 85.1
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 8.8e-147 523.9 315 84.4
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 7.7e-143 510.8 316 83.5
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 1.7e-142 509.6 299 85.6
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 2.9e-142 508.8 299 85.6
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 2.9e-142 508.8 299 85.6
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 3.8e-142 508.4 299 85.3
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 5.0e-142 508.1 316 82.3
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 1.1e-141 506.9 316 82.0
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 1.4e-141 506.5 316 81.6
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 1.9e-141 506.1 316 82.0
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 1.9e-141 506.1 316 82.0
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 1.2e-140 503.4 316 81.3
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 4.7e-140 501.5 314 81.5
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 3.3e-138 495.4 314 78.7
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 8.8e-131 470.7 315 74.0
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 4.4e-130 468.4 315 73.3
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.7e-129 466.5 314 72.9
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 2.8e-129 465.7 315 72.7
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 3.7e-129 465.3 315 73.0
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 6.3e-129 464.5 315 71.7
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 9.1e-128 460.7 316 72.5
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 1.7e-126 456.4 310 71.9
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 2.9e-126 455.7 315 71.4
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 8.5e-126 454.1 316 70.9
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 1.1e-125 453.8 314 71.7
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 1.9e-125 453.0 299 72.6
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 2.5e-125 452.6 315 70.8
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 3.2e-125 452.2 311 70.1
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 4.2e-125 451.8 316 69.9
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 5.5e-125 451.4 314 70.1
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 9.4e-125 450.7 316 70.9
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 2.1e-124 449.5 315 69.8
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 3.6e-124 448.7 308 70.8
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 3.6e-124 448.7 310 70.3
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 8.0e-124 447.6 316 70.3
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 1.4e-123 446.8 316 70.3
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.8e-123 446.4 257 82.1
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 5.2e-123 444.9 314 71.0
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 5.2e-123 444.9 315 70.8
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 1.2e-122 443.7 314 69.7
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 2.0e-122 443.0 311 70.7
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 4.4e-122 441.8 316 68.4
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 5.7e-122 441.4 315 69.8
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 9.8e-122 440.7 314 67.8
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 9.8e-122 440.7 310 69.7
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 1.7e-121 439.9 316 68.4
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.2e-121 439.5 314 69.4
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 2.2e-121 439.5 318 68.9
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.8e-121 439.1 314 68.5
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 2.8e-121 439.1 310 69.0
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 3.7e-121 438.7 315 68.9
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 4.8e-121 438.3 318 68.6
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 8.3e-121 437.6 318 68.6
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 1.4e-120 436.8 310 68.4
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 1.8e-120 436.4 314 68.2
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 2.4e-120 436.0 313 69.0
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 3.1e-120 435.6 312 68.9
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 7.0e-120 434.5 310 68.7
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 9.1e-120 434.1 341 63.6
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 1.2e-119 433.7 316 68.7
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 5.9e-119 431.4 311 69.8
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.3e-118 430.3 311 68.8
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 1.7e-118 429.9 298 68.1
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 6.5e-118 427.9 311 67.2
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 1.5e-117 426.8 316 67.1
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 2.5e-117 426.0 318 66.4
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 7.2e-117 424.5 311 66.9
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 7.2e-117 424.5 314 67.8
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 9.5e-117 424.1 329 64.7
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 9.5e-117 424.1 329 64.7
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 9.5e-117 424.1 329 64.7
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 9.5e-117 424.1 317 65.9
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 2.1e-116 422.9 313 67.1
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.8e-116 422.5 329 64.4
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 3.6e-116 422.2 316 65.2
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 4.7e-116 421.8 313 64.2
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 8.0e-116 421.0 293 70.0
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.0e-115 420.6 315 65.7
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 1.0e-115 420.6 314 65.0
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.4e-115 420.2 315 65.4
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 1.8e-115 419.9 320 65.0
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 2.3e-115 419.5 314 65.3
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 3.0e-115 419.1 314 64.6
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 4.0e-115 418.7 316 65.5
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 6.8e-115 417.9 294 70.4
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 1.5e-114 416.8 316 64.6
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.5e-114 416.8 317 64.4
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.0e-114 416.4 339 62.8
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 2.0e-114 416.4 308 67.2
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 4.4e-114 415.2 317 65.6
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 7.5e-114 414.5 329 63.2
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 1.7e-113 413.3 317 65.6
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 3.7e-113 412.1 308 64.9
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 8.3e-113 411.0 287 68.3
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 1.8e-112 409.8 312 65.1
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 9.2e-112 407.5 307 66.1
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 1.6e-111 406.8 304 66.8
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 4.5e-111 405.2 340 60.0
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 1.7e-110 403.3 269 73.6
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 3.8e-110 402.1 315 63.5
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 6.6e-110 401.4 313 64.2
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 2.5e-109 399.4 312 64.1
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 7.3e-109 397.9 291 66.7
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 1.6e-108 396.7 312 64.1
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 6.1e-108 394.8 286 67.1
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 8.0e-108 394.4 291 65.6
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 1.4e-107 393.7 312 63.8
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 4.0e-107 392.1 314 63.7
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 7.5e-106 387.9 253 71.5
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 4.1e-104 382.1 298 64.4
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 4.1e-104 382.1 313 62.0
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 9.2e-104 380.9 298 64.4
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 4.6e-103 378.6 328 61.3
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 1.0e-86 324.3 230 68.3
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 1.0e-86 324.3 312 53.2
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 4.3e-85 318.9 313 53.7
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 5.6e-85 318.5 313 53.4
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 3.1e-83 312.8 299 53.5
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 4.0e-83 312.4 219 68.9
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 5.2e-83 312.0 240 65.0
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 1.2e-82 310.8 320 50.0
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 7.8e-79 298.1 276 55.8
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 3.0e-78 296.2 307 50.2
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 2.8e-76 289.7 294 50.3
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 2.7e-71 273.1 275 53.8
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 5.1e-70 268.9 302 47.4
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 5.3e-59 232.3 296 43.6
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 2.4e-56 223.4 221 55.7
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 2.2e-49 200.3 295 40.7
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 7.9e-39 165.2 105 74.3
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 1.0e-38 164.9 174 54.0
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 5.1e-30 136.0 93 69.9
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 9.7e-29 131.7 94 69.1
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 2.0e-26 124.0 90 67.8
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 2.5e-24 117.1 90 73.3
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 2.5e-24 117.1 90 73.3
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 3.0e-22 110.2 79 68.4
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 5.9e-18 95.9 90 62.2
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 3.3e-13 80.1 116 44.0
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 6.8e-06 55.8 99 43.4


User provided reference genes

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