Gene: AT3G16280

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G16280
  • Transcript Identifier AT3G16280.2
  • Gene Type Coding gene
  • Location Chr3 : 5518301-5519065 : positive

Gene Family Information

  • ID HOM05D000078
  • #Genes/#Species 3763/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G16280.2
  • uniprot Q9LU18

Descriptions

  • Description Integrase-type DNA-binding superfamily protein
  • Computational description Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot apex, inflorescence meristem, leaf whorl, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G11590.1); Has 5930 Blast hits to 5687 proteins in 256 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 4; Plants - 5911; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
ISS
IEA
Gene Ontologyregulation of transcription, DNA-templated1
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0009873
IEA
GOA Databaseethylene-activated signaling pathway

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
ISS
IEA
Gene OntologyDNA-binding transcription factor activity1
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding2
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016177 DNA-binding domain superfamily
IPR036955 AP2/ERF domain superfamily
IPR001471 AP2/ERF domain
Mapman id Description
15.5.7.2 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB)