Gene: AT3G08840

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G08840
  • Transcript Identifier AT3G08840.2
  • Gene Type Coding gene
  • Location Chr3 : 2679648-2686157 : negative

Gene Family Information

  • ID HOM05D005896
  • #Genes/#Species 133/90
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G08840.2
  • uniprot Q8GXA2

Descriptions

  • Description D-alanine-D-alanine ligase family
  • Computational description D-alanine--D-alanine ligase family; FUNCTIONS IN: D-alanine-D-alanine ligase activity, catalytic activity, ATP binding; INVOLVED IN: peptidoglycan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PreATP-grasp-like fold (InterPro:IPR016185), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), D-alanine--D-alanine ligase, N-terminal (InterPro:IPR011127), D-alanine--D-alanine ligase, C-terminal (InterPro:IPR011095), Pre-ATP-grasp fold (InterPro:IPR013817); Has 8394 Blast hits to 8341 proteins in 2507 species: Archae - 8; Bacteria - 6597; Metazoa - 3; Fungi - 8; Plants - 65; Viruses - 0; Other Eukaryotes - 1713 (source: NCBI BLink).
  • Computational description D-alanine--D-alanine ligase family; FUNCTIONS IN: D-alanine-D-alanine ligase activity, catalytic activity, ATP binding; INVOLVED IN: peptidoglycan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-alanine--D-alanine ligase/VANA/B/C, conserved site (InterPro:IPR000291), D-alanine--D-alanine ligase, C-terminal (InterPro:IPR011095), PreATP-grasp-like fold (InterPro:IPR016185), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Pre-ATP-grasp fold (InterPro:IPR013817), D-alanine--D-alanine ligase, N-terminal (InterPro:IPR011127); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071555
IEA
GOA Databasecell wall organization

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008716
IBA
IEA
Gene OntologyD-alanine-D-alanine ligase activity1
GO:0008716
IEA
InterProD-alanine-D-alanine ligase activity
GO:0046872
IEA
Gene Ontologymetal ion binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0016874
IEA
GOA Databaseligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0009507
HDA
IBA
Gene Ontologychloroplast1 2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013815 ATP-grasp fold, subdomain 1
IPR016185 Pre-ATP-grasp domain superfamily
IPR011095 D-alanine--D-alanine ligase, C-terminal
IPR011127 D-alanine--D-alanine ligase, N-terminal domain
Mapman id Description
13.6.1.8.2.5 Cell cycle organisation.organelle division.plastid division.peptidoglycan system.UDP-N-acetylmuramic acid pentapeptide formation.D-alanine:D-alanine ligase (DDL)