Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1871.7 938 100.0
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1726.8 939 93.3
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1658.3 935 89.5
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1591.2 947 85.5
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1583.2 945 84.8
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1559.3 946 83.8
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1557.3 945 83.6
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1555.4 946 83.5
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1554.7 946 83.7
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1507.7 923 83.3
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1465.3 952 78.5
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1461.0 946 78.2
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1454.5 946 77.7
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1443.7 951 77.8
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1443.3 961 77.0
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1392.1 914 77.2
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1372.5 951 74.6
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1260.7 962 66.9
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1247.3 783 81.0
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1245.3 960 66.1
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1232.6 918 67.9
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1231.5 890 69.6
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1226.1 914 68.1
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1222.2 874 69.8
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1221.5 883 69.5
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1221.5 875 70.4
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1220.3 911 67.8
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1219.5 899 68.1
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1217.2 923 66.8
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1216.1 882 69.8
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1215.7 889 68.8
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1214.1 915 67.7
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1213.7 874 69.6
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1213.0 882 68.9
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1212.6 881 68.8
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1211.1 906 67.4
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1210.3 876 69.6
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1209.9 882 68.8
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1208.4 963 65.4
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1208.4 961 64.9
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1206.8 877 68.8
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1204.9 878 69.2
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1202.2 908 67.3
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1201.8 897 68.1
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1198.7 937 66.5
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1198.3 874 69.2
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1194.9 937 65.4
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1192.2 878 67.7
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1191.8 882 68.4
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1191.0 884 67.8
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1190.6 874 68.6
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1189.1 874 68.0
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1188.7 879 67.7
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1188.3 916 66.4
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1187.9 874 68.5
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1187.9 949 64.5
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1187.2 902 65.5
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1186.8 954 64.4
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1185.6 880 68.4
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1185.2 924 65.3
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1185.2 912 65.8
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1185.2 945 64.7
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1183.7 903 66.4
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1180.2 966 63.3
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1176.8 946 63.8
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1176.8 928 64.1
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1176.4 880 68.1
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1176.0 943 63.7
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1174.1 851 69.1
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1172.1 939 64.7
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1169.5 904 65.5
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1164.8 894 66.2
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1162.1 881 66.6
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1161.4 972 62.4
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1160.2 910 65.1
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1143.3 933 63.8
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1140.9 874 66.5
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1135.2 932 63.2
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1133.6 960 62.9
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1118.2 810 69.5
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1116.3 890 63.6
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1110.1 880 64.4
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1109.0 799 69.3
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1103.2 880 63.0
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1101.3 851 65.8
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1100.9 884 64.7
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1100.9 826 67.4
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1092.8 864 63.7
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1088.2 895 62.9
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1087.4 912 62.0
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 4.5e-308 1061.2 890 61.5
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 8.6e-307 1057.0 899 63.1
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 3.4e-303 1045.0 957 58.6
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 1.5e-287 993.0 888 58.3
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 3.4e-287 991.9 545 89.9
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 3.0e-283 978.8 858 60.4
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 3.6e-273 945.3 867 54.8
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 3.0e-267 925.6 894 52.6
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 2.3e-251 872.8 791 58.2
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 2.2e-233 813.1 524 76.5
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 7.7e-231 804.7 596 67.4
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 1.9e-221 773.5 676 61.4
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.4e-218 762.3 605 65.1
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 6.3e-217 758.4 600 65.2
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 4.0e-211 739.2 587 65.2
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 4.8e-209 732.3 924 45.7
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 3.3e-189 666.4 630 55.9
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 3.9e-182 642.9 517 63.8
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 1.9e-181 640.6 694 49.1
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 5.0e-174 615.9 877 43.6
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 6.8e-171 605.5 445 66.5
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 4.1e-168 596.3 398 72.4
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 3.2e-152 543.5 396 67.4
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 9.3e-128 462.2 293 81.2
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 1.2e-119 435.3 342 65.8
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.5e-104 384.4 265 72.1
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 1.6e-90 338.6 297 60.9
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 8.0e-79 299.7 337 51.6
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 9.8e-77 292.7 216 69.4
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 9.8e-77 292.7 238 60.5
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 1.4e-62 245.7 172 69.8
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 9.2e-59 233.0 248 49.6
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 1.3e-49 202.6 216 47.7
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 1.1e-38 166.4 236 45.3
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 7.8e-34 150.2 139 60.4
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.7e-33 149.1 95 76.8
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 1.1e-27 129.8 596 23.0
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-23 114.0 267 33.7
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 2.1e-18 99.0 133 50.4
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 2.3e-17 95.5 82 54.9
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 2.3e-17 95.5 58 82.8
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 2.5e-11 75.5 71 63.4
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.3e-07 63.2 37 81.1
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 2.8e-07 62.0 112 37.5
TAR381G1729 Trochodendron aralioides HOM05D000406 ORTHO05D002714 6.9e-06 57.4 31 83.9


User provided reference genes

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