Gene: AT3G07880

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G07880
  • Transcript Identifier AT3G07880.1
  • Gene Type Coding gene
  • Location Chr3 : 2514175-2515544 : positive

Gene Family Information

  • ID HOM05D001152
  • #Genes/#Species 537/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G07880.1
  • symbol SCN1
  • full_name SUPERCENTIPEDE1
  • uniprot Q9SFC6

Descriptions

  • Description Immunoglobulin E-set superfamily protein
  • Computational description SUPERCENTIPEDE1 (SCN1); FUNCTIONS IN: Rho GDP-dissociation inhibitor activity; INVOLVED IN: root epidermal cell differentiation, cell tip growth; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO protein GDP dissociation inhibitor (InterPro:IPR000406); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT1G62450.1); Has 660 Blast hits to 660 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 325; Fungi - 162; Plants - 120; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009932
IMP
Gene Ontologycell tip growth1
GO:0010053
IMP
Gene Ontologyroot epidermal cell differentiation1
GO:0007266
IBA
Gene OntologyRho protein signal transduction2
GO:0050790
IEA
GOA Databaseregulation of catalytic activity

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0005094
IEA
GOA DatabaseRho GDP-dissociation inhibitor activity
GO:0005094
IBA
Gene OntologyRho GDP-dissociation inhibitor activity2
GO:0005094
IEA
InterProRho GDP-dissociation inhibitor activity
GO:0005096
IEA
GOA DatabaseGTPase activator activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005737
IEA
InterProcytoplasm
GO:0016020
IBA
Gene Ontologymembrane2
GO:0005829
IBA
Gene Ontologycytosol2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000406 Rho protein GDP-dissociation inhibitor
IPR014756 Immunoglobulin E-set
IPR024792 Rho GDP-dissociation inhibitor domain superfamily
Mapman id Description
27.4.4 Multi-process regulation.Rop-GTPase regulatory system.guanine nucleotide dissociation inhibitor (RopGDI)