Gene: AT2G25100

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G25100
  • Transcript Identifier AT2G25100.1
  • Gene Type Coding gene
  • Location Chr2 : 10679767-10681654 : negative

Gene Family Information

  • ID HOM05D005598
  • #Genes/#Species 137/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G25100.1
  • uniprot Q9SEZ6

Descriptions

  • Description Polynucleotidyl transferase, ribonuclease H-like superfamily protein
  • Computational description Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, RNA binding, catalytic activity, nucleic acid binding; INVOLVED IN: RNA metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit A (InterPro:IPR004649), Ribonuclease HII/HIII (InterPro:IPR001352), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); Has 5906 Blast hits to 5899 proteins in 2308 species: Archae - 263; Bacteria - 4202; Metazoa - 152; Fungi - 142; Plants - 56; Viruses - 3; Other Eukaryotes - 1088 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
IEA
GOA DatabaseRNA metabolic process
GO:0016070
IEA
InterProRNA metabolic process
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0006298
IBA
Gene Ontologymismatch repair1
GO:0043137
IBA
Gene OntologyDNA replication, removal of RNA primer1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004523
IBA
IEA
Gene OntologyRNA-DNA hybrid ribonuclease activity1
GO:0004523
IEA
InterProRNA-DNA hybrid ribonuclease activity
GO:0003723
IEA
Gene OntologyRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032299
IBA
Gene Ontologyribonuclease H2 complex1
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001352 Ribonuclease HII/HIII
IPR024567 Ribonuclease HII/HIII domain
IPR004649 Ribonuclease H2, subunit A
IPR012337 Ribonuclease H-like superfamily
IPR023160 Ribonuclease HII, helix-loop-helix cap domain superfamily
IPR036397 Ribonuclease H superfamily
Mapman id Description
13.2.4.1.1 Cell cycle organisation.DNA replication.maturation.ribonuclease H2 complex.subunit A