Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 2.0e-169 599.0 297 100.0
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 4.8e-163 577.8 297 95.3
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 3.0e-157 558.5 297 92.9
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 3.0e-157 558.5 297 92.6
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 2.9e-152 542.0 292 91.4
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 1.5e-151 539.7 292 90.8
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 7.2e-151 537.3 292 90.1
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 7.2e-151 537.3 292 90.1
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 7.2e-151 537.3 292 90.1
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 9.4e-151 537.0 297 88.2
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 6.1e-150 534.3 292 90.1
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 2.6e-140 502.3 298 82.2
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 1.7e-139 499.6 291 85.2
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 4.1e-130 468.4 298 74.5
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 1.3e-128 463.4 298 74.8
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.3e-128 463.4 298 74.5
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 1.7e-128 463.0 290 75.5
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 2.3e-128 462.6 298 74.5
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 6.6e-128 461.1 298 74.5
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 8.6e-128 460.7 298 75.2
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 8.6e-128 460.7 296 73.3
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 1.1e-127 460.3 298 73.2
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 1.5e-127 459.9 291 75.3
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.9e-127 459.5 293 74.7
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 1.9e-127 459.5 293 75.1
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 2.5e-127 459.1 298 74.5
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 3.3e-127 458.8 297 74.4
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 5.6e-127 458.0 292 74.7
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 1.6e-126 456.4 298 73.2
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 2.8e-126 455.7 292 74.0
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 2.8e-126 455.7 298 74.2
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 2.8e-126 455.7 297 73.1
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 2.8e-126 455.7 298 74.2
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 3.6e-126 455.3 290 74.5
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 6.2e-126 454.5 297 72.4
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 6.2e-126 454.5 298 73.5
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 8.0e-126 454.1 293 73.0
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 8.0e-126 454.1 298 73.2
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 1.1e-125 453.8 299 73.9
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 1.8e-125 453.0 297 71.4
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 3.1e-125 452.2 298 73.5
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 4.0e-125 451.8 296 73.6
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 5.2e-125 451.4 298 71.8
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 6.8e-125 451.1 290 72.1
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 1.2e-124 450.3 299 71.6
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 1.2e-124 450.3 298 72.1
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 1.5e-124 449.9 299 72.6
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.5e-124 449.9 291 72.9
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 2.0e-124 449.5 298 71.1
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 2.0e-124 449.5 291 72.2
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 2.6e-124 449.1 301 73.1
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 4.4e-124 448.4 291 72.2
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 5.8e-124 448.0 291 73.9
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 9.8e-124 447.2 309 71.5
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 9.8e-124 447.2 291 72.2
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 9.8e-124 447.2 291 72.2
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 1.7e-123 446.4 298 71.1
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 1.7e-123 446.4 291 72.9
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 1.7e-123 446.4 299 72.6
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 2.9e-123 445.7 291 72.9
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 1.1e-122 443.7 290 71.7
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 1.1e-122 443.7 297 70.4
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 4.1e-122 441.8 297 71.4
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 7.0e-122 441.0 296 71.3
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 9.2e-122 440.7 292 72.6
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 1.6e-121 439.9 293 70.3
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 7.8e-121 437.6 295 70.8
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 1.3e-120 436.8 291 70.8
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 5.1e-120 434.9 290 71.0
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 2.5e-119 432.6 297 70.4
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 5.6e-119 431.4 291 70.8
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 5.6e-119 431.4 329 64.7
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 5.6e-119 431.4 297 70.4
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 1.2e-118 430.3 331 63.4
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 8.1e-118 427.6 297 69.7
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 1.1e-117 427.2 290 69.7
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.4e-117 426.8 281 73.7
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 2.3e-117 426.0 298 68.5
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 3.1e-117 425.6 293 69.6
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 6.8e-117 424.5 326 64.4
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 1.5e-116 423.3 277 72.2
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 2.6e-116 422.5 297 68.7
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 5.4e-114 414.8 270 72.2
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 1.5e-111 406.8 207 97.6
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 2.5e-111 406.0 298 68.5
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 4.3e-111 405.2 292 69.2
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 9.5e-111 404.1 311 63.7
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 9.5e-111 404.1 284 67.3
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 8.1e-110 401.0 239 77.0
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 3.1e-109 399.1 249 73.5
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 2.2e-107 392.9 270 71.9
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 3.8e-107 392.1 231 77.9
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 8.4e-107 391.0 268 71.3
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 2.1e-105 386.3 238 74.8
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 2.0e-100 369.8 267 65.5
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 3.4e-100 369.0 221 79.2
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.2e-99 366.3 246 71.5
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 6.2e-94 348.2 237 69.2
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 5.8e-92 341.7 294 57.8
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 1.3e-91 340.5 288 58.3
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 3.2e-90 335.9 286 58.4
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 3.4e-76 289.3 411 42.8
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 3.4e-76 289.3 282 57.4
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 7.7e-68 261.5 248 56.9
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 1.1e-55 221.1 153 72.5
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 9.7e-55 218.0 291 39.9
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 1.3e-54 217.6 243 47.3
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 1.1e-53 214.5 257 50.2
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 1.1e-50 204.5 129 76.0
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 3.0e-48 196.4 194 54.6
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 2.8e-46 189.9 117 68.4
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 2.7e-41 173.3 219 47.5
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 4.1e-37 159.5 235 40.0
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 1.2e-36 157.9 175 50.9
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 1.4e-29 134.4 111 59.5
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 7.7e-28 128.6 82 76.8
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 6.6e-27 125.6 70 78.6
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 6.6e-19 99.0 52 82.7
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 1.9e-18 97.4 59 76.3
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 8.9e-16 88.6 52 71.2
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 5.8e-15 85.9 47 74.5
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.3e-14 84.7 55 72.7
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 1.3e-14 84.7 190 33.2
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 4.6e-12 76.3 59 59.3
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 4.3e-10 69.7 156 30.8
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 9.5e-10 68.6 45 68.9
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 4.7e-09 66.2 55 60.0
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 4.7e-09 66.2 55 60.0
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 1.1e-08 65.1 164 30.5
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 2.3e-08 63.9 42 76.2
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 1.2e-07 61.6 162 32.1
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 1.5e-07 61.2 168 28.6
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 9.8e-07 58.5 27 85.2
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 1.7e-06 57.8 79 44.3
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 1.7e-06 57.8 83 43.4


User provided reference genes

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