Gene: AT1G79080

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G79080
  • Transcript Identifier AT1G79080.1
  • Gene Type Coding gene
  • Location Chr1 : 29747102-29748832 : negative

Gene Family Information

  • ID HOM05D006918
  • #Genes/#Species 116/79
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G79080.1
  • uniprot A3KPF8

Descriptions

  • Description Pentatricopeptide repeat (PPR) superfamily protein
  • Computational description Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 46001 Blast hits to 12732 proteins in 282 species: Archae - 3; Bacteria - 36; Metazoa - 518; Fungi - 600; Plants - 43410; Viruses - 0; Other Eukaryotes - 1434 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008150
ND
Gene Ontologybiological_process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA
Gene OntologymRNA binding1
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
ISM
Gene Ontologychloroplast
GO:0009536
IEA
GOA Databaseplastid

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR002885 Pentatricopeptide repeat
Mapman id Description
35.1 not assigned.annotated