Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G79080 Arabidopsis thaliana HOM05D006918 ORTHO05D008525 4.5e-165 585.5 577 100.0
AL2G39540 Arabidopsis lyrata HOM05D006918 ORTHO05D008525 4.1e-150 535.8 581 91.4
Carub.0002s2595 Capsella rubella HOM05D006918 ORTHO05D008525 2.7e-146 523.1 580 90.0
Sp5g34130 Schrenkiella parvula HOM05D006918 ORTHO05D008525 2.7e-146 523.1 582 89.5
Thhalv10018334m.g Eutrema salsugineum HOM05D006918 ORTHO05D008525 4.7e-146 522.3 581 89.7
CARHR072750 Cardamine hirsuta HOM05D006918 ORTHO05D008525 1.4e-142 510.8 584 88.9
C06p52950 Brassica napus HOM05D006918 ORTHO05D008525 1.4e-121 441.0 578 80.4
A07p44220 Brassica napus HOM05D006918 ORTHO05D008525 6.8e-121 438.7 577 80.4
BraA07t31930Z Brassica rapa HOM05D006918 ORTHO05D008525 6.8e-121 438.7 577 80.2
BolC6t40313H Brassica oleracea HOM05D006918 ORTHO05D008525 1.5e-120 437.6 578 80.3
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 1.5e-104 384.4 580 79.7
Aa31LG4G1910 Aethionema arabicum HOM05D001696 ORTHO05D001746 1.1e-97 361.7 580 78.4
BcaB02g08665 Brassica carinata HOM05D006918 ORTHO05D008525 1.8e-89 334.3 578 69.2
BcaNung04908 Brassica carinata HOM05D006918 ORTHO05D008525 4.9e-87 326.2 556 82.0
BcaC08g47471 Brassica carinata HOM05D006918 ORTHO05D008525 7.1e-78 295.8 200 74.5
BcaC08g47472 Brassica carinata HOM05D006918 ORTHO05D008525 6.3e-42 176.4 130 73.8
Migut.M01563 Erythranthe guttata HOM05D006918 ORTHO05D008525 1.5e-40 171.8 229 49.8
TAR636G1403 Trochodendron aralioides HOM05D006918 ORTHO05D008525 7.2e-38 162.9 198 46.5
SGA_v2.0_scaffold7G03576 Striga asiatica HOM05D006918 ORTHO05D008525 1.8e-36 158.3 234 50.0
Cfa019933 Carpinus fangiana HOM05D006918 ORTHO05D008525 3.3e-35 154.1 211 47.4
CSS0032788 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 5.9e-32 143.3 577 66.4
Lalb_Chr01g0007081 Lupinus albus HOM05D006918 ORTHO05D008525 7.0e-25 119.8 81 71.6
MSTRG.7057 Avicennia marina HOM05D006918 ORTHO05D008525 7.7e-24 116.3 84 67.9
Dinv19625 Davidia involucrata HOM05D006918 ORTHO05D008525 2.2e-23 114.8 129 51.2
Cfa019430 Carpinus fangiana HOM05D006918 ORTHO05D008525 3.8e-23 114.0 131 52.7
CiPaw.12G045100 Carya illinoinensis HOM05D006918 ORTHO05D008525 5.0e-23 113.6 132 51.5
Thecc.07G154400 Theobroma cacao HOM05D006918 ORTHO05D008525 1.9e-22 111.7 130 50.8
Oeu056983.1 Olea europaea HOM05D006918 ORTHO05D008525 2.5e-22 111.3 81 64.2
QL04p074473 Quercus lobata HOM05D006918 ORTHO05D008525 2.5e-22 111.3 131 52.7
Haze_08532 Corylus avellana HOM05D006918 ORTHO05D008525 3.2e-22 110.9 131 51.9
Peaxi162Scf00452g00086 Petunia axillaris HOM05D006918 ORTHO05D008525 9.4e-22 109.4 84 60.7
MD10G1198700 Malus domestica HOM05D006918 ORTHO05D008525 1.2e-21 109.0 130 51.5
Manes.14G015600 Manihot esculenta HOM05D006918 ORTHO05D008525 1.2e-21 109.0 130 50.8
Ciclev10019503m.g Citrus clementina HOM05D006918 ORTHO05D008525 1.6e-21 108.6 125 51.2
Potri.011G144300 Populus trichocarpa HOM05D006918 ORTHO05D008525 1.6e-21 108.6 131 51.1
FAN16G1729 Fragaria x ananassa HOM05D006918 ORTHO05D008525 2.1e-21 108.2 72 70.8
Lj5C202T3 Lonicera japonica HOM05D006918 ORTHO05D008525 2.1e-21 108.2 237 33.3
SalBow8G1439 Salvia bowleyana HOM05D006918 ORTHO05D008525 2.7e-21 107.8 81 61.7
Atru.chr12.2189 Acer truncatum HOM05D006918 ORTHO05D008525 8.0e-21 106.3 128 50.0
Cpa.g.sc10.35 Carica papaya HOM05D006918 ORTHO05D008525 1.0e-20 105.9 131 51.9
Nitab4.5_0001749g0050 Nicotiana tabacum HOM05D006918 ORTHO05D008525 1.4e-20 105.5 84 58.3
Sabra11G0128500 Salix brachista HOM05D006918 ORTHO05D008525 1.4e-20 105.5 131 50.4
Potri.001G457300 Populus trichocarpa HOM05D006918 ORTHO05D008525 1.8e-20 105.1 131 49.6
Prupe.4G143000 Prunus persica HOM05D006918 ORTHO05D008525 1.8e-20 105.1 130 50.0
CDE12G0330 Ceratophyllum demersum HOM05D006918 ORTHO05D008525 2.3e-20 104.8 85 56.5
ClCG11G016340 Citrullus lanatus HOM05D006918 ORTHO05D008525 2.3e-20 104.8 130 47.7
PGSC0003DMG400022129 Solanum tuberosum HOM05D006918 ORTHO05D008525 2.3e-20 104.8 84 58.3
Gohir.D05G330400 Gossypium hirsutum HOM05D006918 ORTHO05D008525 4.0e-20 104.0 131 48.1
Gorai.009G354800 Gossypium raimondii HOM05D006918 ORTHO05D008525 4.0e-20 104.0 131 48.1
Sed0019951 Sechium edule HOM05D006918 ORTHO05D008525 4.0e-20 104.0 130 47.7
CSS0011318 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 5.2e-20 103.6 130 46.9
CSS0007445 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 6.8e-20 103.2 130 46.9
MD05G1216400 Malus domestica HOM05D006918 ORTHO05D008525 8.8e-20 102.8 131 48.9
RcHm_v2.0_Chr5g0026921 Rosa chinensis HOM05D006918 ORTHO05D008525 1.5e-19 102.1 130 46.2
MELO3C010560.2 Cucumis melo HOM05D006918 ORTHO05D008525 3.4e-19 100.9 130 48.5
Eucgr.F03183 Eucalyptus grandis HOM05D006918 ORTHO05D008525 5.7e-19 100.1 126 47.6
FvH4_3g15990 Fragaria vesca HOM05D006918 ORTHO05D008525 9.8e-19 99.4 130 47.7
FAN11G3197 Fragaria x ananassa HOM05D006918 ORTHO05D008525 9.8e-19 99.4 130 47.7
Sc03g0007940 Simmondsia chinensis HOM05D006918 ORTHO05D008525 9.8e-19 99.4 130 45.4
CANSAT56G0998 Cannabis sativa HOM05D006918 ORTHO05D008525 1.3e-18 99.0 129 45.7
CsaV3_4G031810 Cucumis sativus L. HOM05D006918 ORTHO05D008525 1.3e-18 99.0 129 46.5
FAN21G2086 Fragaria x ananassa HOM05D006918 ORTHO05D008525 1.7e-18 98.6 130 46.9
FAN21G2559 Fragaria x ananassa HOM05D006918 ORTHO05D008525 1.7e-18 98.6 130 46.9
FAN25G3485 Fragaria x ananassa HOM05D006918 ORTHO05D008525 1.7e-18 98.6 131 46.6
Sabra16G0310000 Salix brachista HOM05D006918 ORTHO05D008525 4.8e-18 97.1 131 45.8
Duzib187G0932 Durio zibethinus HOM05D006918 ORTHO05D008525 8.3e-18 96.3 129 45.7
Duzib187G1351 Durio zibethinus HOM05D006918 ORTHO05D008525 8.3e-18 96.3 129 45.7
Nn7g37872 Nelumbo nucifera HOM05D006918 ORTHO05D008525 1.1e-17 95.9 130 43.1
TAR627G0890 Trochodendron aralioides HOM05D006918 ORTHO05D008525 1.1e-17 95.9 110 48.2
PSO541G4556 Papaver somniferum HOM05D006918 ORTHO05D008525 1.4e-17 95.5 109 47.7
PGR031G3805 Punica granatum HOM05D006918 ORTHO05D008525 1.4e-17 95.5 141 46.8
PSO675G9078 Papaver somniferum HOM05D006918 ORTHO05D008525 4.1e-17 94.0 109 46.8
AUR62044624 Chenopodium quinoa HOM05D006918 ORTHO05D008525 7.0e-17 93.2 184 46.7
Dinv42519 Davidia involucrata HOM05D006918 ORTHO05D008525 7.0e-17 93.2 64 71.9
TWI39G1081 Tripterygium wilfordii HOM05D006918 ORTHO05D008525 1.2e-16 92.4 123 45.5
AUR62043059 Chenopodium quinoa HOM05D006918 ORTHO05D008525 2.0e-16 91.7 181 45.3
Lalb_Chr25g0285091 Lupinus albus HOM05D006918 ORTHO05D008525 4.5e-16 90.5 129 46.5
Lj5A202T40 Lonicera japonica HOM05D006918 ORTHO05D008525 1.3e-15 89.0 133 41.4
Lj3g0009186 Lotus japonicus HOM05D006918 ORTHO05D008525 1.3e-15 89.0 132 43.2
Phvul.005G056300 Phaseolus vulgaris HOM05D006918 ORTHO05D008525 1.3e-15 89.0 133 42.9
Ca_03688_v3 Cicer arietinum L. HOM05D006918 ORTHO05D008525 1.7e-15 88.6 135 43.0
Lalb_Chr19g0133401 Lupinus albus HOM05D006918 ORTHO05D008525 1.7e-15 88.6 72 65.3
VMungo1080G0996 Vigna mungo HOM05D006918 ORTHO05D008525 1.7e-15 88.6 133 42.9
HPP92_013983 Vanilla planifolia HOM05D006918 ORTHO05D008525 3.8e-15 87.4 108 46.3
Nitab4.5_0008437g0030 Nicotiana tabacum HOM05D006918 ORTHO05D008525 1.1e-14 85.9 130 42.3
Cc05_g15990 Coffea canephora HOM05D006918 ORTHO05D008525 1.5e-14 85.5 130 41.5
TWI38G1170 Tripterygium wilfordii HOM05D006918 ORTHO05D008525 1.5e-14 85.5 125 43.2
Glyma.08G172400 Glycine max HOM05D006918 ORTHO05D008525 5.5e-14 83.6 133 42.9
Glyma.15G254900 Glycine max HOM05D006918 ORTHO05D008525 7.2e-14 83.2 131 41.2
TPR.G9758 Trifolium pratense HOM05D006918 ORTHO05D008525 2.1e-13 81.6 132 41.7
Aqoxy6G01201 Aquilegia oxysepala HOM05D006918 ORTHO05D008525 3.6e-13 80.9 125 36.8
DCAR_016820 Daucus carota HOM05D006918 ORTHO05D008525 4.7e-13 80.5 129 41.1
Ah.04g163440 Amaranthus hybridus HOM05D006918 ORTHO05D008525 1.0e-12 79.3 123 41.5
EL10Ac4g08564 Beta vulgaris HOM05D006918 ORTHO05D008525 1.4e-12 79.0 123 42.3
CDE04G0465 Ceratophyllum demersum HOM05D006918 ORTHO05D008525 1.4e-12 79.0 70 54.3
Lsat_1_v5_gn_7_72161 Lactuca sativa HOM05D006918 ORTHO05D008525 1.4e-12 79.0 129 41.1
DCAR_013746 Daucus carota HOM05D006918 ORTHO05D008525 1.8e-12 78.6 128 41.4
TPR.G9735 Trifolium pratense HOM05D006918 ORTHO05D008525 1.8e-12 78.6 133 42.9
Medtr2g069680 Medicago truncatula HOM05D006918 ORTHO05D008525 2.3e-12 78.2 135 39.3
Rhsim04G0005900 Rhododendron simsii HOM05D006918 ORTHO05D008525 1.2e-11 75.9 72 56.9
Solyc07g066390.1 Solanum lycopersicum HOM05D006918 ORTHO05D008525 1.2e-11 75.9 138 39.9
Sopen07g034560 Solanum pennellii HOM05D006918 ORTHO05D008525 1.2e-11 75.9 138 39.9
Lj5C202T5 Lonicera japonica HOM05D006918 ORTHO05D008525 5.7e-11 73.6 136 39.7
Cfa019931 Carpinus fangiana HOM05D006918 ORTHO05D008525 1.7e-10 72.0 51 68.6
CAN.G943.32 Capsicum annuum HOM05D006918 ORTHO05D008525 1.6e-08 65.5 135 36.3
ECA240G1124 Erigeron canadensis HOM05D005398 ORTHO05D000476 1.6e-08 65.5 145 27.6
HanXRQChr05g0161001 Helianthus annuus HOM05D006918 ORTHO05D008525 3.5e-08 64.3 127 33.9
Psat1g002800 Pisum sativum HOM05D006918 ORTHO05D008525 3.5e-08 64.3 135 37.0
CDE07G0885 Ceratophyllum demersum HOM05D004271 ORTHO05D006011 1.7e-07 62.0 140 27.9
Psat5g195760 Pisum sativum HOM05D006888 ORTHO05D008371 1.7e-07 62.0 144 29.2
Lj5C202T4 Lonicera japonica HOM05D006918 ORTHO05D008525 2.9e-07 61.2 56 51.8
Hma1.2p1_1765F.1_g301480 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 3.9e-07 60.8 134 29.1
TPR.G9740 Trifolium pratense HOM05D006918 ORTHO05D008525 3.9e-07 60.8 129 37.2
Actinidia03863 Actinidia chinensis HOM05D006596 ORTHO05D008497 6.6e-07 60.1 128 21.9
Actinidia03971 Actinidia chinensis HOM05D006596 ORTHO05D008497 6.6e-07 60.1 128 21.9
Oeu056521.1 Olea europaea HOM05D002986 ORTHO05D007611 6.6e-07 60.1 134 32.1
Peaxi162Scf00099g00032 Petunia axillaris HOM05D002986 ORTHO05D007611 8.6e-07 59.7 111 30.6
ATR1098G023 Amborella trichopoda HOM05D006918 ORTHO05D008525 1.1e-06 59.3 44 54.5
Sc15g0001700 Simmondsia chinensis HOM05D007352 ORTHO05D009389 1.5e-06 58.9 138 25.4
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.9e-06 58.5 145 24.1
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 2.5e-06 58.2 135 29.6
CANSAT01G2277 Cannabis sativa HOM05D007486 ORTHO05D003673 3.3e-06 57.8 138 26.1
CANSAT01G2464 Cannabis sativa HOM05D007486 ORTHO05D003673 3.3e-06 57.8 138 26.1
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 3.3e-06 57.8 149 29.5
SEGI_02727 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 3.3e-06 57.8 132 31.1
Aa31LG9G8720 Aethionema arabicum HOM05D005973 ORTHO05D007285 4.3e-06 57.4 139 20.9
Ciclev10026953m.g Citrus clementina HOM05D006556 ORTHO05D008146 4.3e-06 57.4 125 28.8
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 5.6e-06 57.0 164 25.6
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 7.3e-06 56.6 111 28.8
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 7.3e-06 56.6 148 26.4
Rhsim02G0073500 Rhododendron simsii HOM05D007128 ORTHO05D009059 7.3e-06 56.6 138 27.5
ATR0712G074 Amborella trichopoda HOM05D007202 ORTHO05D009125 9.5e-06 56.2 210 22.9
Dinv29670 Davidia involucrata HOM05D002825 ORTHO05D003824 9.5e-06 56.2 140 24.3
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 9.5e-06 56.2 149 28.2
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 9.5e-06 56.2 173 26.6
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 9.5e-06 56.2 173 26.6
Medtr7g451470 Medicago truncatula HOM05D002737 ORTHO05D009499 9.5e-06 56.2 133 27.1
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 9.5e-06 56.2 166 26.5
Sc02g0000710 Simmondsia chinensis HOM05D007559 ORTHO05D009642 9.5e-06 56.2 141 30.5


User provided reference genes

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