Gene: AT1G76630

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G76630
  • Transcript Identifier AT1G76630.2
  • Gene Type Coding gene
  • Location Chr1 : 28759699-28765042 : positive

Gene Family Information

  • ID HOM05D005978
  • #Genes/#Species 131/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G76630.2
  • uniprot F4I3Z5

Descriptions

  • Description Tetratricopeptide repeat (TPR)-like superfamily protein
  • Computational description Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 7905 Blast hits to 5237 proteins in 907 species: Archae - 493; Bacteria - 3636; Metazoa - 1081; Fungi - 415; Plants - 279; Viruses - 0; Other Eukaryotes - 2001 (source: NCBI BLink).
  • Computational description Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006401
IEA
Gene OntologyRNA catabolic process
GO:0006401
IEA
InterProRNA catabolic process
GO:0070478
IMP
Gene Ontologynuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay1
GO:0016441
IMP
Gene Ontologyposttranscriptional gene silencing2
GO:1904278
IGI
Gene Ontologypositive regulation of wax biosynthetic process2
GO:0034427
IBA
Gene Ontologynuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
ISM
Gene Ontologycytoplasm1
GO:0055087
IDA
IBA
IEA
Gene OntologySki complex1 3
GO:0055087
IEA
InterProSki complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR039226 Ski3/TTC37
IPR019734 Tetratricopeptide repeat
IPR013105 Tetratricopeptide repeat 2
Mapman id Description
16.4.1.2.6.2 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.SUPERKILLER (SKI) regulation complex.component SKI3