Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 2320.4 1169 100.0
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 2245.7 1169 96.7
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 2127.8 1165 91.8
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 2077.8 1169 90.3
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 2063.1 1171 89.2
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 2055.8 1171 88.9
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 2053.9 1169 88.9
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 2046.6 1170 87.9
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 2031.9 1170 87.9
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 2031.1 1169 88.4
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 2023.1 1170 87.6
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 2015.4 1169 87.4
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1826.2 1169 79.2
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1744.9 1166 75.6
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1475.7 1167 64.1
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1463.7 1168 62.7
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1461.8 1170 62.7
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1452.2 1172 60.9
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1436.4 1165 62.4
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1428.3 1179 61.5
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1423.3 1173 61.6
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1422.9 1169 61.0
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1410.2 1169 59.6
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1408.7 1179 61.1
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1401.3 1384 53.2
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1399.4 1167 59.7
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1393.3 1172 61.9
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1392.5 1172 60.7
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1379.8 1169 59.8
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1369.8 1188 58.7
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1362.1 1119 62.0
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1361.7 1209 57.1
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1358.2 1170 60.0
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1348.6 1172 58.6
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1347.4 1168 57.4
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1347.4 1172 59.4
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1342.4 1173 58.7
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1341.6 1176 58.5
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1340.5 1172 59.0
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1340.1 1172 59.0
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1338.2 1169 57.7
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1333.9 1172 58.0
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1328.2 1172 57.9
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1325.1 1166 57.1
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1320.8 1168 56.6
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1319.3 1171 56.0
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1318.5 1172 58.1
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1314.3 1172 57.3
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1307.4 1174 56.5
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1286.2 1171 55.1
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1280.4 1202 55.9
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1273.8 1172 56.7
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1258.4 1037 61.7
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1254.2 1380 50.1
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1249.2 1162 56.2
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1245.7 1172 54.4
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1238.0 1155 55.6
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1237.2 1165 56.0
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1229.9 1162 54.7
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1229.9 1166 54.1
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1226.1 1165 55.3
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1216.4 1168 53.6
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1215.3 1168 53.5
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1210.7 1177 53.1
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1208.0 1167 53.6
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1207.6 1177 52.6
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1203.3 1054 58.3
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1199.1 1162 53.7
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1197.6 1164 52.3
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1196.0 1168 53.0
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1195.3 1209 51.9
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1186.0 1177 52.3
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1184.5 1168 52.4
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1146.0 1047 56.3
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1136.7 1170 51.2
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1130.9 1173 50.6
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1124.4 1134 52.2
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1097.8 1170 49.7
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 3.9e-309 1065.1 1185 47.2
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 5.0e-304 1048.1 1179 47.8
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 6.5e-296 1021.1 1110 48.5
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 2.0e-292 1009.6 1101 51.0
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 9.7e-292 1007.3 1117 48.6
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 3.2e-287 992.3 1160 47.4
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 3.9e-285 985.3 1212 45.1
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 3.6e-278 962.2 1175 44.4
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 1.5e-260 903.7 834 55.6
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 8.6e-248 861.3 755 58.7
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 5.8e-236 822.0 715 59.6
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 3.2e-234 816.2 785 54.9
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 6.2e-230 802.0 1096 44.0
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 5.8e-196 689.1 759 48.9
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 6.7e-184 649.0 1193 35.0
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 1.3e-174 618.2 591 53.3
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 7.4e-167 592.4 1187 34.5
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 1.7e-147 528.1 425 63.8
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 4.7e-145 520.0 615 47.2
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.6e-137 495.0 1120 33.6
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 4.0e-136 490.3 465 53.1
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 3.1e-128 464.2 844 34.7
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 1.3e-123 448.7 391 56.5
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 5.1e-107 393.7 420 50.0
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.9e-101 375.2 527 40.0
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 1.5e-90 339.0 419 42.0
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 1.9e-90 338.6 280 61.1
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 6.3e-81 307.0 209 68.4
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 7.9e-68 263.5 204 63.2
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-67 262.7 1113 25.7
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 7.7e-63 246.9 180 62.8
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 3.3e-50 204.9 180 58.9
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 4.5e-47 194.5 250 42.0
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 4.7e-44 184.5 235 43.0
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 5.2e-35 154.5 123 59.3
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.3e-27 129.0 322 31.7
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 1.8e-24 119.4 154 44.8
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 3.3e-21 108.6 494 24.7
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 4.1e-16 91.7 100 49.0
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 1.7e-14 86.3 58 60.3
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 1.1e-13 83.6 46 78.3
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 2.5e-13 82.4 46 78.3
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 3.3e-13 82.0 68 55.9
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 1.6e-12 79.7 351 21.9
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 1.2e-10 73.6 53 62.3
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 2.9e-09 68.9 51 66.7
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 2.9e-09 68.9 78 41.0
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 4.1e-08 65.1 114 38.6
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 2.7e-07 62.4 58 58.6


User provided reference genes

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