Gene: AT1G48500
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G48500
- Transcript Identifier AT1G48500.2
- Gene Type Coding gene
- Location Chr1 : 17931658-17934255 : positive
Gene Family Information
- ID HOM05D002346
- #Genes/#Species 289/95
- Phylogenetic origin
- ID ORTHO05D002452
- #Genes/#Species 286/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G48500.2
- symbol JAZ4
- Alias AtJAZ4,TIFY6A,TIFY DOMAIN PROTEIN 6A
- uniprot Q58G47
Descriptions
- Description jasmonate-zim-domain protein 4
- Computational description jasmonate-zim-domain protein 4 (JAZ4); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 3 (TAIR:AT3G17860.1); Has 328 Blast hits to 328 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 326; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
- Computational description jasmonate-zim-domain protein 4 (JAZ4); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 3 (TAIR:AT3G17860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009409 | IMP | Gene Ontology | response to cold | 1 |
| GO:0009867 | IMP | Gene Ontology | jasmonic acid mediated signaling pathway | 1 |
| GO:0009861 | IMP | Gene Ontology | jasmonic acid and ethylene-dependent systemic resistance | 2 |
| GO:2000022 | IBA | Gene Ontology | regulation of jasmonic acid mediated signaling pathway | 3 |
| GO:0009611 | IBA | Gene Ontology | response to wounding | 3 |
| GO:0031347 | IBA | Gene Ontology | regulation of defense response | 3 |
| GO:0006952 | IEA | GOA Database | defense response |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM, IBA | Gene Ontology | nucleus | 3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.43 | RNA biosynthesis.transcriptional regulation.transcription factor (TIFY) |