Gene: AT1G27820

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G27820
  • Transcript Identifier AT1G27820.1
  • Gene Type Coding gene
  • Location Chr1 : 9691628-9692560 : positive

Gene Family Information

  • ID HOM05D000479
  • #Genes/#Species 1104/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G27820.1
  • uniprot Q9SFX6

Descriptions

  • Description Polynucleotidyl transferase, ribonuclease H-like superfamily protein
  • Computational description Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G27890.1); Has 872 Blast hits to 871 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 148; Plants - 353; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0043928
IBA
Gene Ontologyexonucleolytic catabolism of deadenylated mRNA1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004535
IEA
GOA Databasepoly(A)-specific ribonuclease activity
GO:0004535
IBA
Gene Ontologypoly(A)-specific ribonuclease activity1
GO:0004535
IEA
InterPropoly(A)-specific ribonuclease activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030014
IEA
GOA DatabaseCCR4-NOT complex
GO:0030014
IEA
InterProCCR4-NOT complex
GO:0005739
ISM
Gene Ontologymitochondrion
GO:0005634
IEA
GOA Databasenucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0000932
IBA
Gene OntologyP-body1
GO:0030015
IBA
Gene OntologyCCR4-NOT core complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039637 CCR4-NOT transcription complex subunit 7/8/Pop2
IPR006941 Ribonuclease CAF1
IPR036397 Ribonuclease H superfamily
IPR012337 Ribonuclease H-like superfamily
Mapman id Description
35.1 not assigned.annotated