Gene: AT1G22310

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G22310
  • Transcript Identifier AT1G22310.2
  • Gene Type Coding gene
  • Location Chr1 : 7881714-7883644 : negative

Gene Family Information

  • ID HOM05D002925
  • #Genes/#Species 235/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G22310.2
  • symbol MBD8
  • Alias ATMBD8
  • uniprot Q9LME6

Descriptions

  • Description methyl-CPG-binding domain 8
  • Computational description methyl-CPG-binding domain 8 (MBD8); FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 54 Blast hits to 54 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 44; Viruses - 2; Other Eukaryotes - 3 (source: NCBI BLink).
  • Computational description methyl-CPG-binding domain 8 (MBD8); FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding motif (InterPro:IPR017956), DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 148 Blast hits to 124 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 54; Fungi - 5; Plants - 70; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008327
ISS
Gene Ontologymethyl-CpG binding1
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR037472 Methyl-CpG-binding domain-containing protein 8
IPR017956 AT hook, DNA-binding motif
IPR001739 Methyl-CpG DNA binding
IPR016177 DNA-binding domain superfamily
Mapman id Description
35.1 not assigned.annotated