Gene: AT1G18080

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G18080
  • Transcript Identifier AT1G18080.1
  • Gene Type Coding gene
  • Location Chr1 : 6222325-6223901 : positive

Gene Family Information

  • ID HOM05D002288
  • #Genes/#Species 295/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G18080.1
  • symbol ATARCA
  • uniprot O24456

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description ATARCA; FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosolic ribosome, chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: receptor for activated C kinase 1B (TAIR:AT1G48630.1); Has 86693 Blast hits to 36128 proteins in 955 species: Archae - 98; Bacteria - 10140; Metazoa - 33986; Fungi - 19643; Plants - 11429; Viruses - 3; Other Eukaryotes - 11394 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001934
IBA
Gene Ontologypositive regulation of protein phosphorylation1
GO:0072344
IBA
Gene Ontologyrescue of stalled ribosome1
GO:0043410
IEA
GOA Databasepositive regulation of MAPK cascade
GO:0046686
IEP
GOA Databaseresponse to cadmium ion
GO:0007165
IEA
GOA Databasesignal transduction
GO:0060267
ISO
PLAZA Integrative Orthologypositive regulation of respiratory burst Os01g0686800
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus Os01g0686800
GO:0006417
IGI
Gene Ontologyregulation of translation2
GO:0009845
IGI
Gene Ontologyseed germination2
GO:0042254
IGI
Gene Ontologyribosome biogenesis2
GO:0071215
IEP
Gene Ontologycellular response to abscisic acid stimulus2
GO:0009739
IEP
Gene Ontologyresponse to gibberellin3
GO:0010476
IMP
Gene Ontologygibberellin mediated signaling pathway3
GO:0009749
IMP
Gene Ontologyresponse to glucose4
GO:0010228
IMP
Gene Ontologyvegetative to reproductive phase transition of meristem4
GO:0009967
IMP
Gene Ontologypositive regulation of signal transduction5

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005080
IBA
Gene Ontologyprotein kinase C binding1
GO:0043022
IBA
Gene Ontologyribosome binding1
GO:0003735
IDA
GOA Databasestructural constituent of ribosome
GO:0003729
IDA
Gene OntologymRNA binding6
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0005515
IEA
InterProprotein binding
GO:0060090
IDA
Gene Ontologymolecular adaptor activity4
GO:0005078
IMP
Gene OntologyMAP-kinase scaffold activity5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm7
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA, HDA
IBA
Gene Ontologynucleus1 2 8
GO:0005829
IDA
IBA
Gene Ontologycytosol1 2
GO:0042788
IDA
GOA Databasepolysomal ribosome
GO:0009507
IDA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast9
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
Gene Ontologycytosolic ribosome10
GO:0005840
IEA
GOA Databaseribosome
GO:0005886
ISM
Gene Ontologyplasma membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR020472 G-protein beta WD-40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR001680 WD40 repeat
Mapman id Description
17.1.3.1.33 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.associated component RACK1