Gene: AT1G17070

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G17070
  • Transcript Identifier AT1G17070.1
  • Gene Type Coding gene
  • Location Chr1 : 5837653-5840202 : positive

Gene Family Information

  • ID HOM05D002899
  • #Genes/#Species 238/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G17070.1
  • symbol STIPL1
  • Alias AtNTR1
  • full_name SPLICEOSOMAL TIMEKEEPER LOCUS1
  • uniprot Q9SHG6

Descriptions

  • Description GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein
  • Computational description GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein N-terminal (InterPro:IPR022159), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT2G42330.2); Has 1264 Blast hits to 1232 proteins in 250 species: Archae - 2; Bacteria - 6; Metazoa - 735; Fungi - 146; Plants - 190; Viruses - 1; Other Eukaryotes - 184 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IMP
Gene OntologymRNA splicing, via spliceosome1
GO:0042752
IMP
Gene Ontologyregulation of circadian rhythm1
GO:0000390
IBA
Gene Ontologyspliceosomal complex disassembly2
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:1990446
IDA
Gene OntologyU1 snRNP binding3
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0031981
IDA
Gene Ontologynuclear lumen1
GO:0071008
IBA
Gene OntologyU2-type post-mRNA release spliceosomal complex2
GO:0005681
IEA
GOA Databasespliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000467 G-patch domain
IPR022159 Tuftelin interacting protein, N-terminal domain
IPR022783 GCF, C-terminal
IPR024933 Septin and tuftelin interacting protein
Mapman id Description
16.2.7.3.2 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.Intron-Lariat Spliceosome (ILS) complex.component STIPL