Gene: AT1G09770

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G09770
  • Transcript Identifier AT1G09770.1
  • Gene Type Coding gene
  • Location Chr1 : 3162002-3165122 : positive

Gene Family Information

  • ID HOM05D001473
  • #Genes/#Species 430/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G09770.1
  • symbol CDC5
  • Alias ATCDC5,ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5,ATMYBCDC5,ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5
  • uniprot P92948

Descriptions

  • Description cell division cycle 5
  • Computational description cell division cycle 5 (CDC5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: defense response signaling pathway, resistance gene-independent, defense response signaling pathway, resistance gene-dependent, defense response to bacterium, defense response to fungus, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3351 (InterPro:IPR021786), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-4 (TAIR:AT5G11510.1); Has 13137 Blast hits to 10813 proteins in 768 species: Archae - 14; Bacteria - 356; Metazoa - 3570; Fungi - 914; Plants - 4936; Viruses - 8; Other Eukaryotes - 3339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006520
ISO
PLAZA Homology (enrichment)cellular amino acid metabolic process HOM05D001473
GO:0002376
IEA
GOA Databaseimmune system process
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0045087
IEA
GOA Databaseinnate immune response
GO:0007049
IEA
GOA Databasecell cycle
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006952
IEA
GOA Databasedefense response
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0050832
IMP
Gene Ontologydefense response to fungus2
GO:0042742
IMP
Gene Ontologydefense response to bacterium2
GO:0002758
IMP
Gene Ontologyinnate immune response-activating signal transduction2
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016829
ISO
PLAZA Homology (enrichment)lyase activity HOM05D001473
GO:0003824
ISO
PLAZA Homology (enrichment)catalytic activity HOM05D001473
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IBA
Gene Ontologyspliceosomal complex1
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0000974
IBA
Gene OntologyPrp19 complex1
GO:0005576
HDA
Gene Ontologyextracellular region4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR021786 Pre-mRNA splicing factor component Cdc5p/Cef1, C-terminal
IPR009057 Homeobox-like domain superfamily
IPR001005 SANT/Myb domain
Mapman id Description
16.2.5.1.2 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.component CDC5/MAC1