Gene: AT1G03475

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G03475
  • Transcript Identifier AT1G03475.1
  • Gene Type Coding gene
  • Location Chr1 : 869302-871175 : negative

Gene Family Information

  • ID HOM05D000161
  • #Genes/#Species 2285/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G03475.1
  • symbol LIN2
  • Alias ATCPO-I,HEMF1
  • full_name LESION INITIATION 2
  • uniprot Q9LR75

Descriptions

  • Description Coproporphyrinogen III oxidase
  • Computational description LESION INITIATION 2 (LIN2); FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: tetrapyrrole biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260), Coproporphyrinogen III oxidase, conserved site (InterPro:IPR018375); BEST Arabidopsis thaliana protein match is: Coproporphyrinogen III oxidase (TAIR:AT4G03205.1); Has 4884 Blast hits to 4875 proteins in 1228 species: Archae - 0; Bacteria - 2144; Metazoa - 115; Fungi - 160; Plants - 86; Viruses - 0; Other Eukaryotes - 2379 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
ISO
PLAZA Homology (enrichment)regulation of transcription, DNA-templated HOM05D000161
GO:0006779
IEA
GOA Databaseporphyrin-containing compound biosynthetic process
GO:0006779
IEA
InterProporphyrin-containing compound biosynthetic process
GO:0006783
IEA
GOA Databaseheme biosynthetic process
GO:0006782
IBA
IEA
Gene Ontologyprotoporphyrinogen IX biosynthetic process1
GO:0033014
IC
Gene Ontologytetrapyrrole biosynthetic process
GO:0015995
IEA
Gene Ontologychlorophyll biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004109
IEA
GOA Databasecoproporphyrinogen oxidase activity
GO:0004109
IGI
IBA
Gene Ontologycoproporphyrinogen oxidase activity1
GO:0004109
IEA
InterProcoproporphyrinogen oxidase activity
GO:0003690
ISO
PLAZA Homology (enrichment)double-stranded DNA binding HOM05D000161
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0042803
ISS
Gene Ontologyprotein homodimerization activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048046
IDA
GOA Databaseapoplast
GO:0048046
HDA
Gene Ontologyapoplast2
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast3
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
IBA
Gene Ontologychloroplast stroma1 4
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
IDA
Gene Ontologyplastid
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0005576
HDA
Gene Ontologyextracellular region5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001260 Coproporphyrinogen III oxidase, aerobic
IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily
Mapman id Description
7.12.4.2.1 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.oxygen-dependent coproporphyrinogen III oxidase (HemF)